KEGG   PATHWAY: mtg00020
Entry
mtg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis RGTB327
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtg00020  Citrate cycle (TCA cycle)
mtg00020

Module
mtg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtg00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis RGTB327 [GN:mtg]
Gene
MRGA327_07075  citrate synthase [KO:K01647] [EC:2.3.3.1]
MRGA327_05625  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
MRGA327_00425  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MRGA327_20585  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MRGA327_02925  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MRGA327_15140  oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MRGA327_15135  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MRGA327_05990  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
MRGA327_05985  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
MRGA327_01585  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MRGA327_01580  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MRGA327_20460  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MRGA327_20435  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
MRGA327_09750  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00245] [EC:1.3.5.1]
MRGA327_09755  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00246]
MRGA327_09760  fumarate reductase subunit D [KO:K00247]
MRGA327_07780  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MRGA327_17475  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MRGA327_18240  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MRGA327_01335  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
MRGA327_13835  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
MRGA327_13665  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtg00010  Glycolysis / Gluconeogenesis
mtg00053  Ascorbate and aldarate metabolism
mtg00061  Fatty acid biosynthesis
mtg00071  Fatty acid degradation
mtg00190  Oxidative phosphorylation
mtg00220  Arginine biosynthesis
mtg00250  Alanine, aspartate and glutamate metabolism
mtg00280  Valine, leucine and isoleucine degradation
mtg00350  Tyrosine metabolism
mtg00470  D-Amino acid metabolism
mtg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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