KEGG   PATHWAY: mthb03008
Entry
mthb03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Macaca thibetana thibetana (Pere David's macaque)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
mthb03008  Ribosome biogenesis in eukaryotes
mthb03008

Organism
Macaca thibetana thibetana (Pere David's macaque) [GN:mthb]
Gene
126953128  casein kinase II subunit beta [KO:K03115]
126943871  casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
126964242  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
126937379  nucleolar protein 6 isoform X1 [KO:K14544]
126963638  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
126964031  ribosomal RNA-processing protein 7 homolog A-like [KO:K14545]
126933827  WD repeat-containing protein 43 [KO:K14546]
126944060  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
126956514  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
126942222  HEAT repeat-containing protein 1 [KO:K14550]
126932749  WD repeat-containing protein 75 isoform X1 [KO:K14552]
126939610  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
126956221  WD repeat-containing protein 36 [KO:K14554]
126944604  transducin beta-like protein 3 isoform X1 [KO:K14555]
126930956  WD repeat-containing protein 3 [KO:K14556]
126938982  U3 small nucleolar RNA-associated protein 6 homolog isoform X1 [KO:K14557]
126950615  periodic tryptophan protein 2 homolog [KO:K14558]
126934019  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
126960026  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
126947933  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
126956579  treacle protein isoform X1 [KO:K14562]
126957136  LOW QUALITY PROTEIN: rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
126942064  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
126929399  nucleolar protein 56 isoform X1 [KO:K14564]
126932183  nucleolar protein 58 isoform X1 [KO:K14565]
126963670  NHP2-like protein 1 isoform X1 [KO:K12845]
126945463  H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
126956932  H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
126954948  H/ACA ribonucleoprotein complex subunit 1 isoform X1 [KO:K11128]
126930941  H/ACA ribonucleoprotein complex subunit 3-like [KO:K11130]
126958868  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
126940316  rRNA-processing protein FCF1 homolog [KO:K14566]
126959568  rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
126946779  U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [KO:K14567]
126940417  U3 small nucleolar RNA-associated protein 14 homolog C isoform X1 [KO:K14567]
126956184  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
126930472  ribosomal RNA small subunit methyltransferase NEP1 isoform X1 [KO:K14568] [EC:2.1.1.260]
126962229  LOW QUALITY PROTEIN: ribosome biogenesis protein BMS1 homolog [KO:K14569]
126933033  LOW QUALITY PROTEIN: ribosome biogenesis protein BMS1 homolog [KO:K14569]
126933037  LOW QUALITY PROTEIN: ribosome biogenesis protein BMS1 homolog [KO:K14569]
126936224  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
126937563  RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
126961139  ribonucleases P/MRP protein subunit POP1 isoform X1 [KO:K01164] [EC:3.1.26.5]
126962397  ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
126943627  ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
126930702  ribonuclease P/MRP protein subunit POP5 isoform X1 [KO:K03537] [EC:3.1.26.5]
126937428  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
126962857  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
126960022  ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
126950427  ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
126963419  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
126951965  ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
126942472  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
126944942  RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
126960663  LOW QUALITY PROTEIN: exonuclease GOR-like [KO:K14570] [EC:3.1.-.-]
126935928  oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
126947466  5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
126929220  5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
126963272  GTP-binding protein 4 isoform X1 [KO:K06943]
126959342  LOW QUALITY PROTEIN: nucleolar GTP-binding protein 2 [KO:K14537]
126956988  LOW QUALITY PROTEIN: guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
126946512  guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
126947615  guanine nucleotide-binding protein-like 3 [KO:K14538]
126937276  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
126953826  midasin isoform X1 [KO:K14572]
126949774  RNA-binding protein 28 [KO:K14573]
126944077  RNA-binding protein NOB1 [KO:K11883]
126930550  GTP-binding nuclear protein Ran [KO:K07936]
126933589  exportin-1 isoform X1 [KO:K14290]
126948309  60S ribosomal export protein NMD3 isoform X1 [KO:K07562]
126945855  nuclear RNA export factor 5-like [KO:K14284]
126945992  nuclear RNA export factor 2 isoform X1 [KO:K14284]
126945994  nuclear RNA export factor 3 isoform X1 [KO:K14284]
126935466  nuclear RNA export factor 1 [KO:K14284]
126945321  NTF2-related export protein 2 isoform X1 [KO:K14285]
126929320  NTF2-related export protein 1 [KO:K14285]
126964266  eukaryotic translation initiation factor 6 isoform X1 [KO:K03264]
126950309  ribosome maturation protein SBDS [KO:K14574]
126959917  elongation factor-like GTPase 1 isoform X1 [KO:K14536] [EC:3.6.5.-]
126947958  large subunit GTPase 1 homolog isoform X1 [KO:K14539] [EC:3.6.1.-]
126954982  ribosome biogenesis protein SPATA5 isoform X1 [KO:K14575]
126956553  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
126952656  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
126957468  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
126947367  18S ribosomal RNA [KO:K01979]
126947365  5.8S ribosomal RNA [KO:K01986]
126947368  28S ribosomal RNA [KO:K01982]
126940096  small nucleolar RNA U3 [KO:K14483]
126960418  small nucleolar RNA U3 [KO:K14483]
126943637  small nucleolar RNA U3 [KO:K14483]
126957837  small nucleolar RNA U3 [KO:K14483]
126936766  small nucleolar RNA U3 [KO:K14483]
126954133  small nucleolar RNA U3 [KO:K14483]
126929958  small nucleolar RNA U3 [KO:K14483]
126951905  small nucleolar RNA U3 [KO:K14483]
126963524  small nucleolar RNA U3 [KO:K14483]
126947082  small nucleolar RNA U3 [KO:K14483]
126951907  small nucleolar RNA U3 [KO:K14483]
126934590  small nucleolar RNA U3 [KO:K14483]
126954134  small nucleolar RNA U3 [KO:K14483]
126961969  small nucleolar RNA U3 [KO:K14483]
126951908  small nucleolar RNA U3 [KO:K14483]
126947083  small nucleolar RNA U3 [KO:K14483]
126949585  small nucleolar RNA U3 [KO:K14483]
126960453  small nucleolar RNA U3 [KO:K14483]
126951906  small nucleolar RNA U3 [KO:K14483]
126954135  small nucleolar RNA U3 [KO:K14483]
126944308  small nucleolar RNA U3 [KO:K14483]
126940092  small nucleolar RNA U3 [KO:K14483]
126949587  small nucleolar RNA U3 [KO:K14483]
126940094  small nucleolar RNA U3 [KO:K14483]
126949589  small nucleolar RNA U3 [KO:K14483]
126961968  small nucleolar RNA U3 [KO:K14483]
126941620  small nucleolar RNA U3 [KO:K14483]
126933328  small nucleolar RNA U3 [KO:K14483]
126960442  small nucleolar RNA U3 [KO:K14483]
126940090  small nucleolar RNA U3 [KO:K14483]
126947085  small nucleolar RNA U3 [KO:K14483]
126957836  small nucleolar RNA U3 [KO:K14483]
126947440  small nucleolar RNA U3 [KO:K14483]
126944307  small nucleolar RNA U3 [KO:K14483]
126960430  small nucleolar RNA U3 [KO:K14483]
126955917  small nucleolar RNA U3 [KO:K14483]
126934592  small nucleolar RNA U3 [KO:K14483]
126954136  small nucleolar RNA U3 [KO:K14483]
126949590  small nucleolar RNA U3 [KO:K14483]
126960406  small nucleolar RNA U3 [KO:K14483]
126941622  small nucleolar RNA U3 [KO:K14483]
126947441  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
mthb03010  Ribosome
KO pathway
ko03008   
LinkDB

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