KEGG   PATHWAY: mtho00020
Entry
mtho00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Moorella thermoacetica DSM 521
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtho00020  Citrate cycle (TCA cycle)
mtho00020

Module
mtho_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtho00020]
mtho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtho00020]
Other DBs
GO: 0006099
Organism
Moorella thermoacetica DSM 521 [GN:mtho]
Gene
MOTHE_c10830  citA; citrate synthase 1 [KO:K01659] [EC:2.3.3.5]
MOTHE_c09500  icd; isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
MOTHE_c17770  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MOTHE_c00370  padG1; NADH-dependent phenylglyoxylate dehydrogenase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MOTHE_c20260  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MOTHE_c00380  korB1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MOTHE_c20270  korB2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MOTHE_c20280  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
MOTHE_c00400  ndhI1; NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [KO:K00176] [EC:1.2.7.3]
MOTHE_c20250  rsxB5; electron transport complex subunit RsxB [KO:K00176] [EC:1.2.7.3]
MOTHE_c03330  sucD2; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MOTHE_c03310  sucC2; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MOTHE_c23530  ttdA; L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
MOTHE_c23520  fumB; fumarate hydratase class I, anaerobic [KO:K01678] [EC:4.2.1.2]
MOTHE_c05840  pckA1; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MOTHE_c19290  pckA3; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MOTHE_c03070  porA1; pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MOTHE_c19600  porA2; pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MOTHE_c03080  padI; NADH-dependent phenylglyoxylate dehydrogenase subunit beta [KO:K00170] [EC:1.2.7.1]
MOTHE_c15890  porB1; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MOTHE_c19590  porB2; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MOTHE_c03050  padE; NADH-dependent phenylglyoxylate dehydrogenase subunit gamma [KO:K00172] [EC:1.2.7.1]
MOTHE_c19620  porC2; pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
MOTHE_c03060  porD1; pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
MOTHE_c19610  porD3; pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
MOTHE_c00680  nifJ; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtho00010  Glycolysis / Gluconeogenesis
mtho00061  Fatty acid biosynthesis
mtho00071  Fatty acid degradation
mtho00190  Oxidative phosphorylation
mtho00220  Arginine biosynthesis
mtho00250  Alanine, aspartate and glutamate metabolism
mtho00280  Valine, leucine and isoleucine degradation
mtho00350  Tyrosine metabolism
mtho00470  D-Amino acid metabolism
mtho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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