KEGG   PATHWAY: mzh00020
Entry
mzh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosalsum zhilinae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mzh00020  Citrate cycle (TCA cycle)
mzh00020

Module
mzh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mzh00020]
Other DBs
GO: 0006099
Organism
Methanosalsum zhilinae [GN:mzh]
Gene
Mzhil_0665  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Mzhil_0635  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Mzhil_0634  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Mzhil_1266  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Mzhil_1267  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Mzhil_1049  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Mzhil_1050  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Mzhil_0447  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Mzhil_0448  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Mzhil_1752  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Mzhil_0587  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
Mzhil_0586  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
Mzhil_2015  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Mzhil_2016  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Mzhil_2013  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Mzhil_2014  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mzh00010  Glycolysis / Gluconeogenesis
mzh00053  Ascorbate and aldarate metabolism
mzh00071  Fatty acid degradation
mzh00190  Oxidative phosphorylation
mzh00220  Arginine biosynthesis
mzh00250  Alanine, aspartate and glutamate metabolism
mzh00280  Valine, leucine and isoleucine degradation
mzh00350  Tyrosine metabolism
mzh00470  D-Amino acid metabolism
mzh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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