KEGG   PATHWAY: nex00020
Entry
nex00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nocardiopsis exhalans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nex00020  Citrate cycle (TCA cycle)
nex00020

Module
nex_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nex00020]
nex_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nex00020]
nex_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nex00020]
nex_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nex00020]
nex_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nex00020]
Other DBs
GO: 0006099
Organism
Nocardiopsis exhalans [GN:nex]
Gene
NE857_03735  citrate synthase [KO:K01647] [EC:2.3.3.1]
NE857_20565  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NE857_29270  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NE857_32280  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NE857_27635  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NE857_23720  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NE857_33340  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NE857_05040  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NE857_05035  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NE857_06200  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NE857_06195  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NE857_29125  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NE857_29150  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NE857_29120  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NE857_29155  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NE857_29130  succinate dehydrogenase cytochrome b subunit [KO:K00241]
NE857_06495  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NE857_10910  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NE857_24665  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NE857_30295  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
NE857_01280  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NE857_01275  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
NE857_01270  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
NE857_23725  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nex00010  Glycolysis / Gluconeogenesis
nex00053  Ascorbate and aldarate metabolism
nex00061  Fatty acid biosynthesis
nex00071  Fatty acid degradation
nex00190  Oxidative phosphorylation
nex00220  Arginine biosynthesis
nex00250  Alanine, aspartate and glutamate metabolism
nex00280  Valine, leucine and isoleucine degradation
nex00350  Tyrosine metabolism
nex00470  D-Amino acid metabolism
nex00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system