KEGG   PATHWAY: nfr00970
Entry
nfr00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Nocardia farcinica NCTC11134
Class
Genetic Information Processing; Translation
Pathway map
nfr00970  Aminoacyl-tRNA biosynthesis
nfr00970

Organism
Nocardia farcinica NCTC11134 [GN:nfr]
Gene
ERS450000_04175  tRNA-Ala [KO:K14218]
ERS450000_04955  tRNA-Ala [KO:K14218]
ERS450000_05483  tRNA-Ala [KO:K14218]
ERS450000_03414  tRNA-Arg [KO:K14219]
ERS450000_04009  tRNA-Arg [KO:K14219]
ERS450000_02818  tRNA-Arg [KO:K14219]
ERS450000_03068  tRNA-Arg [KO:K14219]
ERS450000_03533  tRNA-Asn [KO:K14220]
ERS450000_02646  tRNA-Asn [KO:K14220]
ERS450000_03607  tRNA-Asp [KO:K14221]
ERS450000_03070  tRNA-Cys [KO:K14222]
ERS450000_00187  tRNA-Cys [KO:K14222]
ERS450000_03528  tRNA-Gln [KO:K14223]
ERS450000_05032  tRNA-Gln [KO:K14223]
ERS450000_05698  tRNA-Gln [KO:K14223]
ERS450000_05699  tRNA-Glu [KO:K14224]
ERS450000_03608  tRNA-Glu [KO:K14224]
ERS450000_00188  tRNA-Gly [KO:K14225]
ERS450000_04435  tRNA-Gly [KO:K14225]
ERS450000_04089  tRNA-Gly [KO:K14225]
ERS450000_03529  tRNA-Gly [KO:K14225]
ERS450000_02779  tRNA-Gly [KO:K14225]
ERS450000_02834  tRNA-His [KO:K14226]
ERS450000_04177  tRNA-Ile [KO:K14227]
ERS450000_03532  tRNA-Leu [KO:K14228]
ERS450000_02853  tRNA-Leu [KO:K14228]
ERS450000_01219  tRNA-Leu [KO:K14228]
ERS450000_05061  tRNA-Leu [KO:K14228]
ERS450000_01331  tRNA-Leu [KO:K14228]
ERS450000_02243  tRNA-Leu [KO:K14228]
ERS450000_04157  tRNA-Ser [KO:K14228]
ERS450000_02839  tRNA-Lys [KO:K14229]
ERS450000_03610  tRNA-Lys [KO:K14229]
ERS450000_03514  tRNA-Lys [KO:K14229]
ERS450000_04771  tRNA-Met [KO:K14230]
ERS450000_03134  tRNA-Met [KO:K14230]
ERS450000_02598  tRNA-Met [KO:K14230]
ERS450000_05976  tRNA-Met [KO:K14230]
ERS450000_05409  tRNA-Met [KO:K14230]
ERS450000_03606  tRNA-Phe [KO:K14231]
ERS450000_03530  tRNA-Pro [KO:K14232]
ERS450000_02778  tRNA-Pro [KO:K14232]
ERS450000_03914  tRNA-Pro [KO:K14232]
ERS450000_02045  tRNA-Pro [KO:K14232]
ERS450000_04013  tRNA-Ser [KO:K14233]
ERS450000_03996  tRNA-Ser [KO:K14233]
ERS450000_03972  tRNA-Ser [KO:K14233]
ERS450000_04008  tRNA-Ser [KO:K14233]
ERS450000_03680  tRNA-Thr [KO:K14234]
ERS450000_04770  tRNA-Thr [KO:K14234]
ERS450000_03877  tRNA-Thr [KO:K14234]
ERS450000_04774  tRNA-Trp [KO:K14235]
ERS450000_03531  tRNA-Trp [KO:K14235]
ERS450000_04769  tRNA-Tyr [KO:K14236]
ERS450000_00189  tRNA-Val [KO:K14237]
ERS450000_02551  tRNA-Val [KO:K14237]
ERS450000_00186  tRNA-Val [KO:K14237]
ERS450000_05697  gltX; Glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
ERS450000_03978  gluQ; Glutamyl-Q tRNA(Asp) synthetase [KO:K01885] [EC:6.1.1.17]
ERS450000_05652  gatA_5; Glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
ERS450000_02903  gatA_3; Glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
ERS450000_02940  gatA_4; Glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
ERS450000_05672  gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [KO:K02434] [EC:6.3.5.6 6.3.5.7]
ERS450000_05651  gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [KO:K02435] [EC:6.3.5.6 6.3.5.7]
ERS450000_00410  alaS; Alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
ERS450000_00404  aspS; Aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
ERS450000_02660  glyQS_1; Glycine--tRNA ligase [KO:K01880] [EC:6.1.1.14]
ERS450000_05974  glyQS_2; Glycine--tRNA ligase [KO:K01880] [EC:6.1.1.14]
ERS450000_00340  thrS_1; Threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
ERS450000_02726  thrS_2; Threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
ERS450000_04101  serS; Serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
ERS450000_03799  cysS; Cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
ERS450000_05003  metG; Methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
ERS450000_00447  fmt; Methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
ERS450000_02759  valS; Valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
ERS450000_04336  leuS; Leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
ERS450000_02337  ileS; Isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
ERS450000_03825  lysX_1; Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX [KO:K04567] [EC:6.1.1.6]
ERS450000_04139  lysX_2; Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX [KO:K04567] [EC:6.1.1.6]
ERS450000_03065  argS_1; Arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
ERS450000_04856  argS_2; Arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
ERS450000_05873  proS; Proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
ERS450000_00389  hisS; Histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
ERS450000_02191  pheS; Phenylalanine--tRNA ligase alpha subunit [KO:K01889] [EC:6.1.1.20]
ERS450000_02190  pheT; Phenylalanine--tRNA ligase beta subunit [KO:K01890] [EC:6.1.1.20]
ERS450000_02119  tyrS; Tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
ERS450000_03180  trpS; Tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
nfr00250  Alanine, aspartate and glutamate metabolism
nfr00260  Glycine, serine and threonine metabolism
nfr00270  Cysteine and methionine metabolism
nfr00290  Valine, leucine and isoleucine biosynthesis
nfr00300  Lysine biosynthesis
nfr00330  Arginine and proline metabolism
nfr00340  Histidine metabolism
nfr00380  Tryptophan metabolism
nfr00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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