KEGG   PATHWAY: nhum00010
Entry
nhum00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Novosphingobium humi
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nhum00010  Glycolysis / Gluconeogenesis
nhum00010

Module
nhum_M00002  Glycolysis, core module involving three-carbon compounds [PATH:nhum00010]
nhum_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nhum00010]
nhum_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nhum00010]
Other DBs
GO: 0006096 0006094
Organism
Novosphingobium humi [GN:nhum]
Gene
PQ457_12175  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
PQ457_00630  1-phosphofructokinase family hexose kinase [KO:K16370] [EC:2.7.1.11]
PQ457_20025  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
PQ457_01240  glpX; class II fructose-bisphosphatase [KO:K11532] [EC:3.1.3.11 3.1.3.37]
PQ457_06065  class I fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
PQ457_04465  tpiA; triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
PQ457_06055  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
PQ457_06060  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
PQ457_15935  gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
PQ457_05440  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
PQ457_14875  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
PQ457_05575  ppdK; pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
PQ457_06515  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
PQ457_05255  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PQ457_05260  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PQ457_05780  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
PQ457_22015  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
PQ457_05790  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PQ457_09070  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PQ457_08805  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PQ457_08800  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PQ457_01840  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
PQ457_05140  adhP; alcohol dehydrogenase AdhP [KO:K13953] [EC:1.1.1.1]
PQ457_06435  zinc-dependent alcohol dehydrogenase family protein [KO:K13953] [EC:1.1.1.1]
PQ457_13930  methanol/ethanol family PQQ-dependent dehydrogenase [KO:K00114] [EC:1.1.2.8]
PQ457_02280  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
PQ457_04840  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
PQ457_06255  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
PQ457_09360  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
PQ457_13870  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
PQ457_17145  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
PQ457_17905  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
PQ457_00950  aldehyde dehydrogenase family protein [KO:K00138] [EC:1.2.1.-]
PQ457_03800  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PQ457_04100  acetate--CoA ligase family protein [KO:K24012] [EC:6.2.1.13]
PQ457_02020  galactose mutarotase [KO:K01785] [EC:5.1.3.3]
PQ457_09550  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
PQ457_09800  galactose mutarotase [KO:K01785] [EC:5.1.3.3]
PQ457_17415  galactose mutarotase [KO:K01785] [EC:5.1.3.3]
PQ457_03375  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
PQ457_14800  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nhum00020  Citrate cycle (TCA cycle)
nhum00030  Pentose phosphate pathway
nhum00500  Starch and sucrose metabolism
nhum00620  Pyruvate metabolism
nhum00640  Propanoate metabolism
nhum00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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