KEGG   PATHWAY: nkf00020
Entry
nkf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Nitrospira kreftii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nkf00020  Citrate cycle (TCA cycle)
nkf00020

Module
nkf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nkf00020]
nkf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nkf00020]
Other DBs
GO: 0006099
Organism
Candidatus Nitrospira kreftii [GN:nkf]
Gene
Nkreftii_002533  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Nkreftii_000983  ATP citrate lyase, alpha subunit [KO:K15230] [EC:2.3.3.8]
Nkreftii_000982  ATP-citrate lyase, beta subunit [KO:K15231] [EC:2.3.3.8]
Nkreftii_000984  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Nkreftii_000985  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Nkreftii_000593  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Nkreftii_002323  hypothetical protein [KO:K00382] [EC:1.8.1.4]
Nkreftii_003131  lipoamide dehydrogenase, E3 component [KO:K00382] [EC:1.8.1.4]
Nkreftii_000140  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Nkreftii_000989  succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
Nkreftii_000988  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Nkreftii_000549  Succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
Nkreftii_000550  Succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Nkreftii_000548  hypothetical protein [KO:K00241]
Nkreftii_002527  fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
Nkreftii_000014  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Nkreftii_002518  Pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
Nkreftii_002519  Pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
Nkreftii_003129  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Nkreftii_000202  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Nkreftii_000201  Alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
Nkreftii_000200  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Nkreftii_003130  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Nkreftii_000163  Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
Nkreftii_000974  2-oxoglutarate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
Nkreftii_001077  Pyruvate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
Nkreftii_003687  Pyruvate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
Nkreftii_000164  Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
Nkreftii_000970  2-oxoglutarate:ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
Nkreftii_001076  2-oxoglutarate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Nkreftii_003688  Pyruvate:ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
Nkreftii_000162  hypothetical protein [KO:K00172] [EC:1.2.7.1]
Nkreftii_000971  2-oxoglutarate:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
Nkreftii_003689  Pyruvate:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
Nkreftii_003690  Pyruvate:ferredoxin oxidoreductase epsilon subunit [KO:K00171] [EC:1.2.7.1]
Nkreftii_000174  hypothetical protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nkf00010  Glycolysis / Gluconeogenesis
nkf00053  Ascorbate and aldarate metabolism
nkf00061  Fatty acid biosynthesis
nkf00071  Fatty acid degradation
nkf00190  Oxidative phosphorylation
nkf00220  Arginine biosynthesis
nkf00250  Alanine, aspartate and glutamate metabolism
nkf00280  Valine, leucine and isoleucine degradation
nkf00350  Tyrosine metabolism
nkf00470  D-Amino acid metabolism
nkf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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