KEGG   PATHWAY: not00630
Entry
not00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Novosphingobium sp. THN1
Class
Metabolism; Carbohydrate metabolism
Pathway map
not00630  Glyoxylate and dicarboxylate metabolism
not00630

Module
not_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:not00630]
Other DBs
GO: 0046487 0043648
Organism
Novosphingobium sp. THN1 [GN:not]
Gene
C7W88_00955  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
C7W88_08115  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C7W88_02145  malate synthase G [KO:K01638] [EC:2.3.3.9]
C7W88_10075  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C7W88_14510  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_00765  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_14725  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_15375  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_16035  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_20790  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_20830  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_08270  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_08565  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_08760  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C7W88_22305  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
C7W88_08275  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
C7W88_21090  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
C7W88_08290  acetyl/propionyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
C7W88_08265  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
C7W88_08280  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
C7W88_18950  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
C7W88_18830  catalase HPII [KO:K03781] [EC:1.11.1.6]
C7W88_14520  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
C7W88_20040  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
C7W88_07820  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
C7W88_08060  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
C7W88_09660  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C7W88_14170  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C7W88_12105  aminomethyl-transferring glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]
C7W88_12110  glycine dehydrogenase (aminomethyl-transferring) [KO:K00283] [EC:1.4.4.2]
C7W88_10055  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7W88_13285  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7W88_12100  gcvH; glycine cleavage system protein H [KO:K02437]
C7W88_18755  xylose isomerase [KO:K01816] [EC:5.3.1.22]
C7W88_18810  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
C7W88_20115  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
C7W88_15220  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C7W88_21145  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
C7W88_21140  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
C7W88_21130  formate dehydrogenase [KO:K00124]
C7W88_21125  NADH-quinone oxidoreductase subunit E [KO:K00127]
C7W88_16160  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
C7W88_07705  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
not00010  Glycolysis / Gluconeogenesis
not00020  Citrate cycle (TCA cycle)
not00030  Pentose phosphate pathway
not00053  Ascorbate and aldarate metabolism
not00071  Fatty acid degradation
not00230  Purine metabolism
not00250  Alanine, aspartate and glutamate metabolism
not00260  Glycine, serine and threonine metabolism
not00620  Pyruvate metabolism
not00710  Carbon fixation by Calvin cycle
not00750  Vitamin B6 metabolism
not00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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