KEGG   PATHWAY: npp00010
Entry
npp00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Novosphingobium sp. PP1Y
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
npp00010  Glycolysis / Gluconeogenesis
npp00010

Module
npp_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:npp00010]
npp_M00002  Glycolysis, core module involving three-carbon compounds [PATH:npp00010]
npp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:npp00010]
npp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:npp00010]
Other DBs
GO: 0006096 0006094
Organism
Novosphingobium sp. PP1Y [GN:npp]
Gene
PP1Y_AT6927  glucokinase [KO:K00845] [EC:2.7.1.2]
PP1Y_AT29797  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
PP1Y_AT24049  6-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
PP1Y_AT18091  6-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
PP1Y_Mpl7755  fructose-1,6-bisphosphatase I [KO:K03841] [EC:3.1.3.11]
PP1Y_AT35871  fructose-1,6-bisphosphatase II [KO:K11532] [EC:3.1.3.11 3.1.3.37]
PP1Y_AT28733  fructose-bisphosphate aldolase, class I [KO:K01623] [EC:4.1.2.13]
PP1Y_AT27062  triosephosphate isomerase (TIM) [KO:K01803] [EC:5.3.1.1]
PP1Y_AT28765  glyceraldehyde 3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
PP1Y_AT23129  glyceraldehyde-3-phosphate dehydrogenase [KO:K00150] [EC:1.2.1.59]
PP1Y_AT28745  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
PP1Y_AT22937  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
PP1Y_AT710  phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
PP1Y_AT24969  enolase [KO:K01689] [EC:4.2.1.11]
PP1Y_AT35211  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
PP1Y_AT31098  pyruvate,orthophosphate dikinase [KO:K01006] [EC:2.7.9.1]
PP1Y_AT25281  pyruvate,orthophosphate dikinase [KO:K01006] [EC:2.7.9.1]
PP1Y_AT16019  pyruvate,orthophosphate dikinase [KO:K01006] [EC:2.7.9.1]
PP1Y_AT23513  pyruvate, water dikinase [KO:K01007] [EC:2.7.9.2]
PP1Y_AT26309  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PP1Y_AT26298  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PP1Y_AT13756  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
PP1Y_Mpl5575  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
PP1Y_AT25743  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
PP1Y_AT17260  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PP1Y_AT25757  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PP1Y_AT22962  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
PP1Y_AT30563  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PP1Y_AT30556  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PP1Y_Mpl3283  alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
PP1Y_AT9397  S-(hydroxymethyl)glutathione dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
PP1Y_AT34984  alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
PP1Y_AT22926  alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
PP1Y_Mpl9457  dehydrogenase [KO:K00002] [EC:1.1.1.2]
PP1Y_AT5722  pyrrolo-quinoline quinone [KO:K00114] [EC:1.1.2.8]
PP1Y_Mpl10829  gluconate 2-dehydrogenase (acceptor) [KO:K22474] [EC:1.1.5.5]
PP1Y_Mpl4225  aldehyde dehydrogenase (NAD+) [KO:K00128] [EC:1.2.1.3]
PP1Y_AT11682  aldehyde dehydrogenase (NAD+) [KO:K00128] [EC:1.2.1.3]
PP1Y_Mpl6357  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
PP1Y_AT5672  aldehyde dehydrogenase (NAD+) [KO:K00138] [EC:1.2.1.-]
PP1Y_AT15728  aldehyde dehydrogenase (acceptor) [KO:K00138] [EC:1.2.1.-]
PP1Y_AT31557  aldehyde dehydrogenase (acceptor) [KO:K00138] [EC:1.2.1.-]
PP1Y_AT25829  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PP1Y_Mpl8310  6-carboxyhexanoate-CoA ligase [KO:K24012] [EC:6.2.1.13]
PP1Y_AT13194  CoA-binding protein [KO:K24012] [EC:6.2.1.13]
PP1Y_Mpl6750  acetyl-CoA synthetase (ADP-forming) [KO:K24012] [EC:6.2.1.13]
PP1Y_Mpl1219  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
PP1Y_AT30169  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
PP1Y_AT23706  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
PP1Y_AT28221  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
npp00020  Citrate cycle (TCA cycle)
npp00030  Pentose phosphate pathway
npp00500  Starch and sucrose metabolism
npp00620  Pyruvate metabolism
npp00640  Propanoate metabolism
npp00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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