KEGG   PATHWAY: nsy00030
Entry
nsy00030                    Pathway                                
Name
Pentose phosphate pathway - Nicotiana sylvestris (wood tobacco)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nsy00030  Pentose phosphate pathway
nsy00030

Module
nsy_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:nsy00030]
nsy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:nsy00030]
nsy_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:nsy00030]
nsy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:nsy00030]
Other DBs
GO: 0006098
Organism
Nicotiana sylvestris (wood tobacco) [GN:nsy]
Gene
104220853  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
104225311  glucose-6-phosphate isomerase, cytosolic isoform X1 [KO:K01810] [EC:5.3.1.9]
104224772  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform [KO:K00036] [EC:1.1.1.49 1.1.1.363]
104231008  glucose-6-phosphate 1-dehydrogenase, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
104237556  glucose-6-phosphate 1-dehydrogenase, chloroplastic isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
104215888  glucose-6-phosphate 1-dehydrogenase 4, chloroplastic isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
104234370  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
104221059  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104221061  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104233663  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104215398  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104244386  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104237092  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104233376  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
104220178  probable 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
104224394  6-phosphogluconate dehydrogenase, decarboxylating 3 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
104237438  6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
104223882  6-phosphogluconate dehydrogenase, decarboxylating 1 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
104244652  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
104224676  ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [KO:K01783] [EC:5.1.3.1]
104230044  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
104234556  transketolase, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
104229284  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
104239067  uncharacterized protein LOC104239067 [KO:K00616] [EC:2.2.1.2]
104236438  probable transaldolase [KO:K00616] [EC:2.2.1.2]
104221873  probable ribose-5-phosphate isomerase 4, chloroplastic [KO:K01807] [EC:5.3.1.6]
104239599  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
104231662  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
104221680  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
104241409  probable ribokinase [KO:K00852] [EC:2.7.1.15]
104221526  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
104232687  phosphoglucomutase, chloroplastic isoform X1 [KO:K01835] [EC:5.4.2.2]
104232136  phosphoglucomutase, cytoplasmic-like isoform X1 [KO:K01835] [EC:5.4.2.2]
104230802  ribose-phosphate pyrophosphokinase 1-like isoform X1 [KO:K00948] [EC:2.7.6.1]
104222219  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
104233852  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
104246220  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
104238314  probable gluconokinase [KO:K00851] [EC:2.7.1.12]
104228370  fructose-bisphosphate aldolase 1, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
104236811  fructose-bisphosphate aldolase cytoplasmic isozyme [KO:K01623] [EC:4.1.2.13]
104238386  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
104213252  fructose-bisphosphate aldolase 1, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
104224289  probable fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
104227610  fructose-bisphosphate aldolase cytoplasmic isozyme-like [KO:K01623] [EC:4.1.2.13]
104217906  fructose-bisphosphate aldolase 1, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
104245697  fructose-bisphosphate aldolase, cytoplasmic isozyme 1 [KO:K01623] [EC:4.1.2.13]
104214613  fructose-1,6-bisphosphatase, cytosolic-like isoform X1 [KO:K03841] [EC:3.1.3.11]
104232283  fructose-1,6-bisphosphatase, chloroplastic-like [KO:K03841] [EC:3.1.3.11]
104235493  fructose-1,6-bisphosphatase, chloroplastic-like [KO:K03841] [EC:3.1.3.11]
104222116  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
104229474  fructose-1,6-bisphosphatase, chloroplastic-like [KO:K03841] [EC:3.1.3.11]
104236118  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
104228585  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
104215743  ATP-dependent 6-phosphofructokinase 6-like isoform X1 [KO:K00850] [EC:2.7.1.11]
104249594  ATP-dependent 6-phosphofructokinase 4, chloroplastic [KO:K00850] [EC:2.7.1.11]
104210310  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
104211414  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
104233509  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
104227347  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
104236164  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like isoform X1 [KO:K00895] [EC:2.7.1.90]
104212151  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
104242303  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
104247835  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
nsy00010  Glycolysis / Gluconeogenesis
nsy00040  Pentose and glucuronate interconversions
nsy00052  Galactose metabolism
nsy00230  Purine metabolism
nsy00240  Pyrimidine metabolism
nsy00340  Histidine metabolism
nsy00630  Glyoxylate and dicarboxylate metabolism
nsy00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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