KEGG   PATHWAY: nvi04137
Entry
nvi04137                    Pathway                                
Name
Mitophagy - animal - Nasonia vitripennis (jewel wasp)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
nvi04137  Mitophagy - animal
nvi04137

Other DBs
GO: 0000422
Organism
Nasonia vitripennis (jewel wasp) [GN:nvi]
Gene
100680119  serine-rich adhesin for platelets isoform X1 [KO:K17985]
100122372  serine/threonine-protein kinase PINK1, mitochondrial isoform X1 [KO:K05688] [EC:2.7.11.1]
100113971  TOM7; translocase of outer mitochondrial membrane 7 homolog [KO:K17771]
100124015  mitochondrial import receptor subunit TOM40 homolog 1 [KO:K11518]
100121090  mitochondrial import receptor subunit TOM40 homolog 1-like [KO:K11518]
100216321  Tomm20; mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
100121167  mitochondrial import receptor subunit TOM70 [KO:K17768]
100122062  E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
100121007  E3 ubiquitin-protein ligase MARCH5 isoform X1 [KO:K10660] [EC:2.3.2.27]
100122994  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
100114179  mitochondrial E3 ubiquitin protein ligase 1 [KO:K15688] [EC:2.3.2.27]
100123214  E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
100119052  E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
100122205  E3 ubiquitin-protein ligase SIAH1B [KO:K04506] [EC:2.3.2.27]
100118236  potential E3 ubiquitin-protein ligase ariadne-1 [KO:K11968] [EC:2.3.2.31]
100121959  transmembrane GTPase Marf isoform X1 [KO:K06030] [EC:3.6.5.-]
100119170  mitochondrial Rho GTPase isoform X4 [KO:K07870] [EC:3.6.5.-]
100115892  ubiquitin-60S ribosomal protein L40 [KO:K02927]
100115365  ubiquitin-40S ribosomal protein S27a [KO:K02977]
100115227  ubiquitin C-like [KO:K08770]
100115399  polyubiquitin-A [KO:K08770]
100124264  sequestosome-1 [KO:K14381]
100122336  inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K05410] [EC:2.7.11.10]
100679003  gamma-aminobutyric acid receptor-associated protein [KO:K08341]
116416799  microtubule-associated proteins 1A/1B light chain 3B [KO:K10435]
100117105  beclin-1-like protein isoform X1 [KO:K08334]
100123875  ubiquitin carboxyl-terminal hydrolase 30 [KO:K11851] [EC:3.4.19.12]
116416403  bcl-2-like protein 2 [KO:K04570]
100313939  Pgam5; phosphoglycerate mutase family member 5 [KO:K15637] [EC:3.1.3.16]
100121624  Ckiialpha; casein kinase II alpha subunit [KO:K03097] [EC:2.7.11.1]
100118343  casein kinase II subunit beta isoform X3 [KO:K03115]
100120276  tyrosine-protein kinase Src64B isoform X1 [KO:K05704] [EC:2.7.10.2]
103317723  FUN14 domain-containing protein 1 isoform X2 [KO:K17986]
100120393  BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 isoform X2 [KO:K15464]
100679156  peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
100119887  sorting and assembly machinery component 50 homolog isoform X2 [KO:K07277]
100115233  prohibitin-2 isoform X1 [KO:K17081]
100117580  metaxin-1 isoform X1 [KO:K17776]
100119679  metaxin-2 isoform X1 [KO:K17776]
100119627  eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
100122826  uncharacterized protein LOC100122826 isoform X1 [KO:K04374]
100121916  stress-activated protein kinase JNK isoform X1 [KO:K04440] [EC:2.7.11.24]
100123087  transcription factor AP-1 [KO:K04448]
100114262  ras-like protein 1 [KO:K07827]
100117915  ras-related protein M-Ras [KO:K07831]
100120586  ras-like protein 2 [KO:K07830]
100121394  protein similar isoform X1 [KO:K08268]
100123890  forkhead box protein O [KO:K09408]
100118797  forkhead box protein O-like isoform X3 [KO:K09408]
100120846  transcription factor EC isoform X4 [KO:K09455]
100123864  rab5 GDP/GTP exchange factor [KO:K20131]
100119168  ras-related protein Rab-5C isoform X2 [KO:K07889]
100123196  vacuolar fusion protein MON1 homolog A [KO:K20195]
100679066  vacuolar fusion protein CCZ1 homolog isoform X1 [KO:K27045]
100114458  ras-related protein Rab-7a [KO:K07897]
100114269  TBC1 domain family member 15 isoform X1 [KO:K20168]
100115745  mitochondrial fission 1 protein isoform X1 [KO:K17969]
100115862  Atg9; autophagy-related protein 9 [KO:K17907]
100116450  dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
100121887  transitional endoplasmic reticulum ATPase TER94 [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
nvi04140  Autophagy - animal
KO pathway
ko04137   
LinkDB

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