KEGG   PATHWAY: nwt00020
Entry
nwt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nitrospina watsonii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nwt00020  Citrate cycle (TCA cycle)
nwt00020

Module
nwt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nwt00020]
nwt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nwt00020]
nwt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nwt00020]
Other DBs
GO: 0006099
Organism
Nitrospina watsonii [GN:nwt]
Gene
NSPWAT_1265  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NSPWAT_1516  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NSPWAT_0722  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
NSPWAT_0727  lpd; dihydrolipoamide dehydrogenase E3 component of pyruvate/2-oxoglutarate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
NSPWAT_1372  lpdA; dihydrolipoamide dehydrogenase E3 component of pyruvate/2-oxoglutarate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
NSPWAT_1179  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
NSPWAT_1180  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
NSPWAT_0926  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NSPWAT_1095  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NSPWAT_0925  sdhB; succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NSPWAT_1096  sdhB; succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NSPWAT_1097  putative succinate dehydrogenase, subunit C, sdhE [KO:K00241]
NSPWAT_2793  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
NSPWAT_0093  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NSPWAT_0391  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NSPWAT_0729  aceE; pyruvate dehydrogenase, decarboxylase component E1 [KO:K00163] [EC:1.2.4.1]
NSPWAT_0728  aceF; pyruvate dehydrogenase, dihydrolipoamide acetyltransferase component E2 [KO:K00627] [EC:2.3.1.12]
NSPWAT_0455  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
NSPWAT_1174  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
NSPWAT_0456  porB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
NSPWAT_1173  forB; 2-oxoglutarate:ferredoxin oxidoredutase, beta subunit [KO:K00170] [EC:1.2.7.1]
NSPWAT_0457  porC; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
NSPWAT_1172  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
NSPWAT_0458  putative pyruvate:ferredoxin oxidoreductase, epsilon subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nwt00010  Glycolysis / Gluconeogenesis
nwt00061  Fatty acid biosynthesis
nwt00071  Fatty acid degradation
nwt00190  Oxidative phosphorylation
nwt00220  Arginine biosynthesis
nwt00250  Alanine, aspartate and glutamate metabolism
nwt00280  Valine, leucine and isoleucine degradation
nwt00350  Tyrosine metabolism
nwt00470  D-Amino acid metabolism
nwt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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