KEGG   PATHWAY: ocp00630
Entry
ocp00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ornithinimicrobium cryptoxanthini
Class
Metabolism; Carbohydrate metabolism
Pathway map
ocp00630  Glyoxylate and dicarboxylate metabolism
ocp00630

Module
ocp_M00012  Glyoxylate cycle [PATH:ocp00630]
ocp_M00621  Glycine cleavage system [PATH:ocp00630]
Other DBs
GO: 0046487 0043648
Organism
Ornithinimicrobium cryptoxanthini [GN:ocp]
Gene
NF557_14225  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NF557_01740  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
NF557_05075  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
NF557_13130  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
NF557_14220  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
NF557_04585  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NF557_04085  citrate synthase [KO:K01647] [EC:2.3.3.1]
NF557_06955  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NF557_03365  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NF557_05685  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NF557_13530  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NF557_14300  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NF557_07565  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
NF557_14475  SDR family oxidoreductase [KO:K00023] [EC:1.1.1.36]
NF557_13860  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
NF557_04805  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
NF557_04885  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
NF557_04950  methylmalonyl-CoA mutase subunit beta [KO:K01847] [EC:5.4.99.2]
NF557_04955  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
NF557_01775  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
NF557_12485  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
NF557_13350  catalase [KO:K03781] [EC:1.11.1.6]
NF557_15235  catalase [KO:K03781] [EC:1.11.1.6]
NF557_06245  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
NF557_10245  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
NF557_13960  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NF557_08500  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
NF557_06345  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
NF557_06325  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NF557_15245  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NF557_08475  gcvH; glycine cleavage system protein GcvH [KO:K02437]
NF557_06355  glycerate kinase [KO:K00865] [EC:2.7.1.165]
NF557_06420  glycerate kinase [KO:K00865] [EC:2.7.1.165]
NF557_00750  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NF557_14050  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NF557_07055  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
NF557_07050  4Fe-4S dicluster domain-containing protein [KO:K00124]
NF557_00200  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
NF557_01000  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ocp00010  Glycolysis / Gluconeogenesis
ocp00020  Citrate cycle (TCA cycle)
ocp00030  Pentose phosphate pathway
ocp00053  Ascorbate and aldarate metabolism
ocp00071  Fatty acid degradation
ocp00230  Purine metabolism
ocp00250  Alanine, aspartate and glutamate metabolism
ocp00260  Glycine, serine and threonine metabolism
ocp00620  Pyruvate metabolism
ocp00710  Carbon fixation by Calvin cycle
ocp00750  Vitamin B6 metabolism
ocp00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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