KEGG   PATHWAY: ofu03008
Entry
ofu03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Ostrinia furnacalis (Asian corn borer)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ofu03008  Ribosome biogenesis in eukaryotes
ofu03008

Organism
Ostrinia furnacalis (Asian corn borer) [GN:ofu]
Gene
114352514  casein kinase II subunit beta [KO:K03115]
114349784  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
114349770  nucleolar protein 6-like [KO:K14544]
114363664  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
114353508  WD repeat-containing protein 43 [KO:K14546]
114361616  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
114351217  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
114366105  HEAT repeat-containing protein 1 [KO:K14550]
114360690  WD repeat-containing protein 75 [KO:K14552]
114360939  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
114356031  WD repeat-containing protein 36 [KO:K14554]
114365968  transducin beta-like protein 3 [KO:K14555]
114360924  WD repeat-containing protein 3-like [KO:K14556]
114353836  WD repeat-containing protein 3-like [KO:K14556]
114361150  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
114364473  periodic tryptophan protein 2 homolog isoform X1 [KO:K14558]
114353165  U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [KO:K14559]
114353551  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
114355878  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
114353502  rRNA 2'-O-methyltransferase fibrillarin-like isoform X1 [KO:K14563] [EC:2.1.1.-]
114356552  nucleolar protein 56 [KO:K14564]
114357385  nucleolar protein 58 [KO:K14565]
114363654  NHP2-like protein 1 [KO:K12845]
114353019  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
114357085  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
114364340  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
114360792  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
114354185  rRNA-processing protein FCF1 homolog [KO:K14566]
114350244  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
114363084  ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
114364637  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
114350512  ribosome biogenesis protein BMS1 homolog [KO:K14569]
114360726  RNA cytidine acetyltransferase isoform X1 [KO:K14521] [EC:2.3.1.-]
114364608  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
114360345  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
114352142  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
114354990  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
114353108  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
114361492  ribonuclease P protein subunit p20-like isoform X1 [KO:K14527] [EC:3.1.26.5]
114356455  ribonuclease P protein subunit p30 isoform X1 [KO:K03539] [EC:3.1.26.5]
114365485  ribonuclease P protein subunit p40-like isoform X1 [KO:K14530] [EC:3.1.26.5]
114356594  RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
114351553  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
114360588  exonuclease GOR [KO:K14570] [EC:3.1.-.-]
114366760  oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
114354256  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
114362729  5'-3' exoribonuclease 2 homolog isoform X1 [KO:K12619] [EC:3.1.13.-]
114356059  nucleolar GTP-binding protein 1 [KO:K06943]
114358136  nucleolar GTP-binding protein 2 [KO:K14537]
114354267  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
114362509  nuclear valosin-containing protein-like [KO:K14571]
114351009  midasin-like [KO:K14572]
114350555  RNA-binding protein 28-like isoform X1 [KO:K14573]
114350229  RNA-binding protein NOB1 [KO:K11883]
114354106  GTP-binding nuclear protein Ran [KO:K07936]
114363010  exportin-1 [KO:K14290]
114358558  60S ribosomal export protein NMD3 [KO:K07562]
114361139  uncharacterized protein LOC114361139 isoform X1 [KO:K14284]
114357493  nuclear RNA export factor 1-like [KO:K14284]
114354295  nuclear RNA export factor 1 [KO:K14284]
114351870  NTF2-related export protein [KO:K14285]
114354355  eukaryotic translation initiation factor 6 [KO:K03264]
114355021  ribosome maturation protein SBDS [KO:K14574]
114351441  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
114355038  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
114356690  ATPase family protein 2 homolog [KO:K14575]
114359593  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
114365616  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
114362010  serine/threonine-protein kinase RIO2 isoform X1 [KO:K07179] [EC:2.7.11.1]
114364941  small subunit ribosomal RNA [KO:K01979]
114356185  5S ribosomal RNA [KO:K01981]
114359252  small nucleolar RNA U3 [KO:K14483]
114356200  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ofu03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system