KEGG   PATHWAY: olg03008
Entry
olg03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Osmia lignaria (orchard mason bee)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
olg03008  Ribosome biogenesis in eukaryotes
olg03008

Organism
Osmia lignaria (orchard mason bee) [GN:olg]
Gene
117610711  casein kinase II subunit beta isoform X1 [KO:K03115]
117602089  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
117600263  nucleolar protein 6 [KO:K14544]
117604573  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
117606749  WD repeat-containing protein 43 [KO:K14546]
117607110  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
117602547  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
117602097  HEAT repeat-containing protein 1 [KO:K14550]
117605146  WD repeat-containing protein 75 [KO:K14552]
117604266  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
117601615  WD repeat-containing protein 36 [KO:K14554]
117601297  transducin beta-like protein 3 [KO:K14555]
117607457  WD repeat-containing protein 3 [KO:K14556]
117608946  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
117611591  periodic tryptophan protein 2 homolog [KO:K14558]
117604714  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
117610471  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
117606490  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
117600545  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
117609572  nucleolar protein 56 [KO:K14564]
117604953  nucleolar protein 58 [KO:K14565]
117611152  NHP2-like protein 1 [KO:K12845]
117605243  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
117603686  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
117609145  H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
117600598  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
117600888  rRNA-processing protein FCF1 homolog [KO:K14566]
117608638  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
117605285  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
117605234  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
117608468  ribosome biogenesis protein BMS1 homolog [KO:K14569]
117611130  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
117601409  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
117608697  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
117607999  uncharacterized protein LOC117607999 [KO:K14523] [EC:3.1.26.5]
117604990  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
117610015  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
117605381  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
117609231  ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
117603109  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
117606929  ribonuclease P protein subunit p40-like [KO:K14530] [EC:3.1.26.5]
117608317  small RNA degrading nuclease 5 isoform X1 [KO:K14570] [EC:3.1.-.-]
117608326  RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
117602572  serine-rich adhesin for platelets-like isoform X1 [KO:K14570] [EC:3.1.-.-]
117600801  probable oligoribonuclease isoform X1 [KO:K13288] [EC:3.1.-.-]
117601133  probable oligoribonuclease isoform X1 [KO:K13288] [EC:3.1.-.-]
117608750  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
117609943  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
117608363  nucleolar GTP-binding protein 1 [KO:K06943]
117602313  nucleolar GTP-binding protein 2 [KO:K14537]
117609184  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
117604241  nuclear valosin-containing protein-like [KO:K14571]
117608842  midasin [KO:K14572]
117611609  RNA-binding protein 28 [KO:K14573]
117606924  RNA-binding protein NOB1 [KO:K11883]
117602400  GTP-binding nuclear protein Ran [KO:K07936]
117600937  exportin-1 [KO:K14290]
117609559  60S ribosomal export protein NMD3 [KO:K07562]
117606732  nuclear RNA export factor 1-like [KO:K14284]
117600886  nuclear RNA export factor 1-like [KO:K14284]
117609113  nuclear RNA export factor 2-like [KO:K14284]
117600644  NTF2-related export protein [KO:K14285]
117601154  eukaryotic translation initiation factor 6 [KO:K03264]
117609599  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
117604695  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
117601246  ATPase family protein 2 homolog isoform X1 [KO:K14575]
117600713  adenylate kinase isoenzyme 6 isoform X1 [KO:K18532] [EC:2.7.4.3]
117607136  serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
117609684  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
olg03010  Ribosome
KO pathway
ko03008   
LinkDB

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