KEGG   PATHWAY: orn00630
Entry
orn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ornithinimicrobium avium
Class
Metabolism; Carbohydrate metabolism
Pathway map
orn00630  Glyoxylate and dicarboxylate metabolism
orn00630

Module
orn_M00012  Glyoxylate cycle [PATH:orn00630]
orn_M00621  Glycine cleavage system [PATH:orn00630]
Other DBs
GO: 0046487 0043648
Organism
Ornithinimicrobium avium [GN:orn]
Gene
DV701_00585  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
DV701_10840  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
DV701_11000  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
DV701_10090  hypothetical protein [KO:K01895] [EC:6.2.1.1]
DV701_01145  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
DV701_00580  malate synthase A [KO:K01638] [EC:2.3.3.9]
DV701_17735  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DV701_17310  citrate synthase [KO:K01647] [EC:2.3.3.1]
DV701_08245  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
DV701_08250  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
DV701_03835  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DV701_15445  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
DV701_16675  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
DV701_02870  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
DV701_08190  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
DV701_06395  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
DV701_08200  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
DV701_17900  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
DV701_06720  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
DV701_11550  methylmalonyl-CoA mutase [KO:K01849] [EC:5.4.99.2]
DV701_11135  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
DV701_17765  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
DV701_11555  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
DV701_03020  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
DV701_01140  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
DV701_06930  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
DV701_01130  4Fe-4S dicluster domain-containing protein [KO:K11473] [EC:1.1.99.14]
DV701_01710  catalase [KO:K03781] [EC:1.11.1.6]
DV701_13055  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
DV701_05370  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
DV701_01685  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
DV701_08320  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
DV701_04060  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
DV701_03095  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
DV701_05285  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
DV701_05300  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DV701_08980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DV701_03120  gcvH; glycine cleavage system protein GcvH [KO:K02437]
DV701_08395  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
DV701_05240  hypothetical protein [KO:K00865] [EC:2.7.1.165]
DV701_09505  glycerate kinase [KO:K00865] [EC:2.7.1.165]
DV701_04755  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
DV701_08380  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
DV701_10825  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
DV701_10830  dehydrogenase [KO:K00123] [EC:1.17.1.9]
DV701_10820  4Fe-4S dicluster domain-containing protein [KO:K00124]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
orn00010  Glycolysis / Gluconeogenesis
orn00020  Citrate cycle (TCA cycle)
orn00030  Pentose phosphate pathway
orn00053  Ascorbate and aldarate metabolism
orn00071  Fatty acid degradation
orn00230  Purine metabolism
orn00250  Alanine, aspartate and glutamate metabolism
orn00260  Glycine, serine and threonine metabolism
orn00620  Pyruvate metabolism
orn00710  Carbon fixation by Calvin cycle
orn00750  Vitamin B6 metabolism
orn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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