KEGG   PATHWAY: otd00630
Entry
otd00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ottowia testudinis
Class
Metabolism; Carbohydrate metabolism
Pathway map
otd00630  Glyoxylate and dicarboxylate metabolism
otd00630

Module
otd_M00012  Glyoxylate cycle [PATH:otd00630]
otd_M00621  Glycine cleavage system [PATH:otd00630]
Other DBs
GO: 0046487 0043648
Organism
Ottowia testudinis [GN:otd]
Gene
J1M35_12570  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
J1M35_11890  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
J1M35_14055  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
J1M35_02625  malate synthase G [KO:K01638] [EC:2.3.3.9]
J1M35_12730  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J1M35_12765  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
J1M35_12485  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
J1M35_12715  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J1M35_09765  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
J1M35_12960  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J1M35_13215  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
J1M35_18985  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J1M35_20330  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
J1M35_12955  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
J1M35_08460  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
J1M35_08450  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
J1M35_08435  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
J1M35_01010  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
J1M35_02260  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
J1M35_02265  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
J1M35_19555  catalase [KO:K03781] [EC:1.11.1.6]
J1M35_12455  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
J1M35_12035  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
J1M35_08620  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
J1M35_12245  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
J1M35_06670  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
J1M35_06685  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
J1M35_11610  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J1M35_15250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J1M35_05770  glycine cleavage system protein H [KO:K02437]
J1M35_06675  gcvH; glycine cleavage system protein GcvH [KO:K02437]
J1M35_06225  glycerate kinase [KO:K11529] [EC:2.7.1.165]
J1M35_00150  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
J1M35_16620  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
J1M35_05345  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
J1M35_05810  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
J1M35_05340  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
J1M35_05805  fdxH; formate dehydrogenase subunit beta [KO:K00124]
J1M35_05800  formate dehydrogenase subunit gamma [KO:K00127]
J1M35_07550  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
J1M35_09310  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
J1M35_19325  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J1M35_02050  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
otd00010  Glycolysis / Gluconeogenesis
otd00020  Citrate cycle (TCA cycle)
otd00030  Pentose phosphate pathway
otd00053  Ascorbate and aldarate metabolism
otd00071  Fatty acid degradation
otd00230  Purine metabolism
otd00250  Alanine, aspartate and glutamate metabolism
otd00260  Glycine, serine and threonine metabolism
otd00620  Pyruvate metabolism
otd00750  Vitamin B6 metabolism
otd00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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