KEGG   PATHWAY: otd00020
Entry
otd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ottowia testudinis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
otd00020  Citrate cycle (TCA cycle)
otd00020

Module
otd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:otd00020]
otd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:otd00020]
otd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:otd00020]
otd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:otd00020]
otd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:otd00020]
Other DBs
GO: 0006099
Organism
Ottowia testudinis [GN:otd]
Gene
J1M35_12765  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
J1M35_12485  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
J1M35_12715  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J1M35_16690  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J1M35_16700  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J1M35_15275  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
J1M35_15270  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
J1M35_11610  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J1M35_15250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J1M35_08510  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
J1M35_08515  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
J1M35_01200  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J1M35_01195  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J1M35_12750  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J1M35_12755  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J1M35_12740  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
J1M35_12745  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
J1M35_14065  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
J1M35_14060  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J1M35_12730  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J1M35_01820  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
J1M35_02580  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
J1M35_11625  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
J1M35_11620  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
otd00010  Glycolysis / Gluconeogenesis
otd00053  Ascorbate and aldarate metabolism
otd00061  Fatty acid biosynthesis
otd00071  Fatty acid degradation
otd00190  Oxidative phosphorylation
otd00220  Arginine biosynthesis
otd00250  Alanine, aspartate and glutamate metabolism
otd00280  Valine, leucine and isoleucine degradation
otd00350  Tyrosine metabolism
otd00470  D-Amino acid metabolism
otd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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