KEGG   PATHWAY: palz00030
Entry
palz00030                   Pathway                                
Name
Pentose phosphate pathway - Populus alba (white poplar)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
palz00030  Pentose phosphate pathway
palz00030

Module
palz_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:palz00030]
palz_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:palz00030]
palz_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:palz00030]
palz_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:palz00030]
Other DBs
GO: 0006098
Organism
Populus alba (white poplar) [GN:palz]
Gene
118031567  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
118039944  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
118043007  LOW QUALITY PROTEIN: glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
118054473  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
118046130  glucose-6-phosphate 1-dehydrogenase 6, cytoplasmic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
118046894  glucose-6-phosphate 1-dehydrogenase 1, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
118058125  glucose-6-phosphate 1-dehydrogenase 6, cytoplasmic-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
118060900  inactive glucose-6-phosphate 1-dehydrogenase 4, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
118043279  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
118046698  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
118057086  6-phosphogluconolactonase 3, chloroplastic-like [KO:K01057] [EC:3.1.1.31]
118057087  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
118062396  probable 6-phosphogluconolactonase 1 isoform X1 [KO:K01057] [EC:3.1.1.31]
118030134  6-phosphogluconate dehydrogenase, decarboxylating 2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
118033820  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
118034952  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
118039032  6-phosphogluconate dehydrogenase, decarboxylating 2-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
118039033  6-phosphogluconate dehydrogenase, decarboxylating 2-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
118039034  6-phosphogluconate dehydrogenase, decarboxylating 2-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
118039987  6-phosphogluconate dehydrogenase, decarboxylating 1-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
118051290  6-phosphogluconate dehydrogenase, decarboxylating 2-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
118063477  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
118033380  ribulose-5-phosphate-3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
118041315  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
118042218  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
118059789  transketolase, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
118042699  transaldolase isoform X1 [KO:K00616] [EC:2.2.1.2]
118054409  transaldolase-like [KO:K00616] [EC:2.2.1.2]
118035986  transaldolase isoform X1 [KO:K00616] [EC:2.2.1.2]
118053109  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
118053110  probable ribose-5-phosphate isomerase 3, chloroplastic isoform X1 [KO:K01807] [EC:5.3.1.6]
118044052  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
118045334  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
118046356  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
118039867  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
118040787  probable ribose-5-phosphate isomerase 4, chloroplastic isoform X1 [KO:K01807] [EC:5.3.1.6]
118051518  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
118038346  ribokinase [KO:K00852] [EC:2.7.1.15]
118056384  phosphoglucomutase, chloroplastic-like isoform X1 [KO:K01835] [EC:5.4.2.2]
118046408  phosphoglucomutase, cytoplasmic-like [KO:K01835] [EC:5.4.2.2]
118060656  phosphoglucomutase, chloroplastic-like [KO:K01835] [EC:5.4.2.2]
118061175  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
118051765  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
118045239  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
118039294  ribose-phosphate pyrophosphokinase 1-like isoform X1 [KO:K00948] [EC:2.7.6.1]
118043798  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase-like [KO:K00131] [EC:1.2.1.9]
118034345  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase isoform X1 [KO:K00131] [EC:1.2.1.9]
118051111  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase-like [KO:K00131] [EC:1.2.1.9]
118042911  gluconokinase-like [KO:K00851] [EC:2.7.1.12]
118037022  gluconokinase-like isoform X1 [KO:K00851] [EC:2.7.1.12]
118037023  gluconokinase-like [KO:K00851] [EC:2.7.1.12]
118063117  fructose-bisphosphate aldolase 1, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
118057892  fructose-bisphosphate aldolase 3, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
118037650  fructose-bisphosphate aldolase, cytoplasmic isozyme 1 isoform X1 [KO:K01623] [EC:4.1.2.13]
118058968  fructose-bisphosphate aldolase 1, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
118049051  fructose-bisphosphate aldolase 6, cytosolic-like [KO:K01623] [EC:4.1.2.13]
118039694  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
118039882  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
118050602  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
118029467  fructose-bisphosphate aldolase 5, cytosolic [KO:K01623] [EC:4.1.2.13]
118051590  fructose-bisphosphate aldolase 1, cytoplasmic [KO:K01623] [EC:4.1.2.13]
118041449  fructose-1,6-bisphosphatase, cytosolic-like [KO:K03841] [EC:3.1.3.11]
118036145  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
118037544  fructose-1,6-bisphosphatase, chloroplastic-like isoform X1 [KO:K03841] [EC:3.1.3.11]
118037545  fructose-1,6-bisphosphatase, chloroplastic-like [KO:K03841] [EC:3.1.3.11]
118062250  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
118063171  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
118030646  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
118054168  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
118036616  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
118048014  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
118049116  ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 [KO:K00850] [EC:2.7.1.11]
118042019  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [KO:K00895] [EC:2.7.1.90]
118035088  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
118058388  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like [KO:K00895] [EC:2.7.1.90]
118061873  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
palz00010  Glycolysis / Gluconeogenesis
palz00040  Pentose and glucuronate interconversions
palz00052  Galactose metabolism
palz00230  Purine metabolism
palz00240  Pyrimidine metabolism
palz00340  Histidine metabolism
palz00630  Glyoxylate and dicarboxylate metabolism
palz00750  Vitamin B6 metabolism
KO pathway
ko00030   
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