KEGG   PATHWAY: pami02024
Entry
pami02024                   Pathway                                
Name
Quorum sensing - Paracoccus aminophilus
Description
Quorum sensing (QS) is a regulatory system that allows bacteria to share information about cell density and adjust gene expression accordingly. All QS bacteria produce and release chemical signal molecules called autoinducers (AIs) that increase in concentration as a function of cell density. The most commonly studied AIs belong to one of the following three categories: acylated homoserine lactones, also referred to as AI-1, used by Gram-negative bacteria; peptide signals, used by Gram-positive bacteria; and AI-2, used by both Gram-negative and Gram-positive bacteria. QS can be divided into at least 4 steps: production of AIs by the bacterial cell; release of AIs, either actively or passively, into the surrounding environment; recognition of AIs by specific receptors; and leading to changes in gene regulation once they exceed a threshold concentration. The processes controlled by QS include virulence, competence, conjugation, antibiotic production, motility, sporulation, and biofilm formation.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pami02024  Quorum sensing
pami02024

Other DBs
GO: 0009372
Organism
Paracoccus aminophilus [GN:pami]
Gene
JCM7686_0582  RNA chaperone Hfq [KO:K03666]
JCM7686_0763  anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
JCM7686_0759  anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
JCM7686_2068  3-deoxy-7-phosphoheptulonate synthase [KO:K01626] [EC:2.5.1.54]
JCM7686_pAMI5p117  two-component system [KO:K07645] [EC:2.7.13.3]
JCM7686_pAMI5p118  two component transcriptional regulator [KO:K07666]
JCM7686_pAMI4p336  KDP operon transcriptional regulatory protein kdpE [KO:K07667]
JCM7686_3182  transcriptional regulator, LuxR family [KO:K07782]
JCM7686_pAMI4p043  autoinducer 2-binding protein LsrB [KO:K10555]
JCM7686_pAMI4p041  ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component [KO:K10556]
JCM7686_pAMI4p042  ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component [KO:K10557]
JCM7686_pAMI4p040  monosaccharide-transporting ATPase [KO:K10558]
JCM7686_pAMI4p038  autoinducer 2 (AI-2) kinase [KO:K11216] [EC:2.7.1.189]
JCM7686_pAMI4p039  transcriptional regulator, DeoR family [KO:K11531]
JCM7686_pAMI4p037  hypothetical protein [KO:K11530] [EC:5.3.1.32]
JCM7686_1461  spermidine/putrescine-binding periplasmic protein [KO:K02055]
JCM7686_2724  spermidine/putrescine transport system, substrate-binding protein [KO:K02055]
JCM7686_2805  Fe3+ ABC transporter periplasmic protein [KO:K02055]
JCM7686_0744  spermidine/putrescine transport system, substrate-binding protein [KO:K02055]
JCM7686_1758  spermidine/putrescine transport system, substrate-binding protein [KO:K02055]
JCM7686_1717  spermidine/putrescine-binding periplasmic protein [KO:K02055]
JCM7686_1832  spermidine/putrescine transport system, solute-binding protein [KO:K02055]
JCM7686_1841  spermidine/putrescine transport system, substrate-binding protein [KO:K02055]
JCM7686_0189  putative spermidine/putrescine transport system, substrate-binding protein [KO:K02055]
JCM7686_pAMI1p049  ABC transporter, substrate-binding protein [KO:K02055]
JCM7686_1459  ABC-type spermidine/putrescine transport system, permease component II [KO:K02053]
JCM7686_1761  spermidine/putrescine transport system, permease protein [KO:K02053]
JCM7686_2727  spermidine/putrescine transport system, permease protein [KO:K02053]
JCM7686_2804  spermidine/putrescine transport system, permease protein [KO:K02053]
JCM7686_0746  spermidine/putrescine transport system, permease protein [KO:K02053]
JCM7686_1714  spermidine/putrescine transport system, permease protein [KO:K02053]
JCM7686_0187  putative spermidine/putrescine transport system, permease protein [KO:K02053]
JCM7686_pAMI1p055  spermidine/putrescine ABC transporter, permease [KO:K02053]
JCM7686_1831  spermidine/putrescine transport system, permease protein [KO:K02053 K02054]
JCM7686_1760  spermidine/putrescine transport system, permease protein [KO:K02054]
JCM7686_2726  spermidine/putrescine transport system, permease protein [KO:K02054]
JCM7686_2803  spermidine/putrescine transport system, permease protein [KO:K02054]
JCM7686_0745  spermidine/putrescine transport system, permease protein [KO:K02054]
JCM7686_1715  spermidine/putrescine transport system, permease protein [KO:K02054]
JCM7686_0188  putative spermidine/putrescine transport system, permease protein [KO:K02054]
JCM7686_pAMI1p051  spermidine/putrescine ABC transporter, permease [KO:K02054]
JCM7686_1460  ABC-type spermidine/putrescine transport system, permease component I [KO:K02054]
JCM7686_2725  spermidine/putrescine transport system, ATP-binding protein [KO:K02052]
JCM7686_2801  spermidine/putrescine transport system ATP-binding protein [KO:K02052]
JCM7686_0743  spermidine/putrescine transport system, ATP-binding protein [KO:K02052]
JCM7686_1716  spermidine/putrescine transport system, ATP-binding protein [KO:K02052]
JCM7686_1830  spermidine/putrescine ABC transporter, ATPase subunit [KO:K02052]
JCM7686_1759  spermidine/putrescine transport system, ATP-binding protein [KO:K02052]
JCM7686_0186  putative spermidine/putrescine transport system, ATP-binding protein [KO:K02052]
JCM7686_pAMI1p050  spermidine/putrescine ABC transporter, ATP-binding subunit [KO:K02052]
JCM7686_1140  ABC-type branched-chain amino acid transport systems, periplasmic component [KO:K01999]
JCM7686_2069  branched-chain amino acid transport system, substrate-binding protein [KO:K01999]
JCM7686_pAMI6p016  ABC-type branched-chain amino acid transport systems, periplasmic component [KO:K01999]
JCM7686_pAMI6p103  ABC-type branched-chain amino acid transport systems, periplasmic component [KO:K01999]
JCM7686_pAMI4p129  ABC-type branched-chain amino acid transport systems, periplasmic component [KO:K01999]
JCM7686_1139  high-affinity branched-chain amino acid transport system, permease protein [KO:K01997]
JCM7686_2072  branched-chain amino acid transport system permease protein [KO:K01997]
JCM7686_pAMI6p017  branched-chain amino acid ABC-type transport system, permease component [KO:K01997]
JCM7686_1138  high-affinity branched-chain amino acid transport system, permease protein [KO:K01998]
JCM7686_2073  branched-chain amino acid transport system permease protein [KO:K01998]
JCM7686_1137  high-affinity branched-chain amino acid transport, ATP-binding protein [KO:K01995]
JCM7686_2070  branched-chain amino acid transport system, ATP-binding protein [KO:K01995]
JCM7686_pAMI6p019  ABC-type branched-chain amino acid transport systems, ATPase component [KO:K01995]
JCM7686_1136  high-affinity branched-chain amino acid transport, ATP-binding protein [KO:K01996]
JCM7686_2071  branched-chain amino acid transport system, ATP-binding protein [KO:K01996]
JCM7686_pAMI6p020  ABC-type branched-chain amino acid transport systems, ATPase component [KO:K01996]
JCM7686_0566  zinc-uptake regulator, Zur [KO:K09823]
JCM7686_3404  GTP cyclohydrolase II [KO:K01497] [EC:3.5.4.25]
JCM7686_1546  diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [KO:K11752] [EC:3.5.4.26 1.1.1.193]
JCM7686_0438  hypothetical protein [KO:K09936]
JCM7686_pAMI4p093  hypothetical protein [KO:K09936]
JCM7686_pAMI5p187  hypothetical protein [KO:K09936]
JCM7686_1554  peptide/nickel transport system, substrate-binding protein [KO:K15580]
JCM7686_1555  peptide/nickel transport system, permease protein [KO:K15581]
JCM7686_1556  peptide/nickel transport system, permease protein [KO:K15582]
JCM7686_1557  peptide/nickel transport system, ATP-binding protein [KO:K15583]
JCM7686_1558  peptide/nickel transport system, ATP-binding protein [KO:K10823]
JCM7686_1358  ABC-type dipeptide transport system, periplasmic component [KO:K02035]
JCM7686_1360  ABC-type dipeptide transport system, periplasmic component [KO:K02035]
JCM7686_1799  peptide/nickel transport system, substrate-binding protein [KO:K02035]
JCM7686_1595  peptide/nickel transport system, substrate-binding protein [KO:K02035]
JCM7686_1746  peptide/nickel transport system, substrate-binding protein [KO:K02035]
JCM7686_1700  peptide/nickel transport system, substrate-binding protein [KO:K02035]
JCM7686_1729  peptide/nickel transport system, substrate-binding protein [KO:K02035]
JCM7686_0174  ABC-type dipeptide/oligopeptide/nickel transporter substrate-binding protein [KO:K02035]
JCM7686_0217  ABC-type dipeptide transport system, periplasmic component [KO:K02035]
JCM7686_2323  peptide/nickel transport system, substrate-binding protein [KO:K02035]
JCM7686_pAMI1p012  ABC transporter, substrate binding component [KO:K02035]
JCM7686_pAMI1p087  ABC-type dipeptide/oligopeptide/nickel transport system, substrate binding component [KO:K02035]
JCM7686_pAMI4p076  ABC-type dipeptide transport system, extracellular solute-binding protein [KO:K02035]
JCM7686_pAMI4p097  ABC-type dipeptide transport system, extracellular solute-binding protein [KO:K02035]
JCM7686_pAMI4p163  ABC-type dipeptide transport system, extracellular solute-binding protein [KO:K02035]
JCM7686_pAMI4p167  ABC-type dipeptide transport system, extracellular solute-binding protein [KO:K02035]
JCM7686_pAMI4p175  ABC-type dipeptide transport system, periplasmic component [KO:K02035]
JCM7686_2846  peptide/nickel transport system, substrate-binding protein [KO:K02035]
JCM7686_2888  peptide/nickel transport system, substrate-binding protein [KO:K02035]
JCM7686_pAMI6p082  ABC-type dipeptide transport system, periplasmic component [KO:K02035]
JCM7686_3159  peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein [KO:K02035]
JCM7686_pAMI1p037  ABC-type dipeptide/oligopeptide/nickel transport systems, substrate binding component [KO:K02035]
JCM7686_pAMI1p043  ABC transporter, substrate binding component [KO:K02035]
JCM7686_pAMI4p016  ABC-type dipeptide transport system, extracellular solute-binding protein [KO:K02035]
JCM7686_pAMI4p022  ABC-type dipeptide transport system, extracellular solute-binding protein [KO:K02035]
JCM7686_pAMI4p024  ABC-type dipeptide transport system, extracellular solute-binding protein [KO:K02035]
JCM7686_pAMI4p123  ABC-type dipeptide transport system, periplasmic component [KO:K02035]
JCM7686_pAMI5p108  ABC-type dipeptide transport system, periplasmic component [KO:K02035]
JCM7686_pAMI5p209  ABC-type dipeptide transport system [KO:K02035]
JCM7686_1451  ABC-type dipeptide transport system, periplasmic component [KO:K02035]
JCM7686_0175  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_1798  peptide/nickel transport system, permease protein [KO:K02033]
JCM7686_1452  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_1594  peptide/nickel transport system, permease protein [KO:K02033]
JCM7686_1742  peptide/nickel transport system, permease protein [KO:K02033]
JCM7686_1701  peptide/nickel transport system, permease protein [KO:K02033]
JCM7686_1730  peptide/nickel transport system, permease protein [KO:K02033]
JCM7686_0223  ABC-type dipeptide/oligopeptide/nickel transport system, permease component [KO:K02033]
JCM7686_2324  peptide/nickel transport system, permease protein [KO:K02033]
JCM7686_pAMI1p013  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_pAMI1p086  ABC-type dipeptide/oligopeptide/nickel transport system, permease component [KO:K02033]
JCM7686_pAMI4p077  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_pAMI4p094  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_pAMI4p164  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_2847  peptide/nickel transport system, permease protein [KO:K02033]
JCM7686_3164  peptide/opine/nickel uptake family ABC transporter, permease protein [KO:K02033]
JCM7686_pAMI1p036  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_pAMI1p042  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_pAMI4p015  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_pAMI5p107  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_pAMI5p208  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_pAMI6p084  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02033]
JCM7686_1797  peptide/nickel transport system, permease protein [KO:K02034]
JCM7686_1593  peptide/nickel transport system, permease protein [KO:K02034]
JCM7686_1743  peptide/nickel transport system, permease protein [KO:K02034]
JCM7686_1702  peptide/nickel transport system, permease protein [KO:K02034]
JCM7686_1731  peptide/nickel transport system, permease protein [KO:K02034]
JCM7686_0176  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_0222  ABC-type dipeptide/oligopeptide/nickel transport system, permease component [KO:K02034]
JCM7686_2325  peptide/nickel transport system, permease protein [KO:K02034]
JCM7686_pAMI1p014  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_pAMI1p085  ABC-type dipeptide/oligopeptide/nickel transport system, permease component [KO:K02034]
JCM7686_pAMI4p078  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_pAMI4p095  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_pAMI4p165  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_2848  peptide/nickel transport system, permease protein [KO:K02034]
JCM7686_3165  peptide/opine/nickel uptake family ABC transporter, permease protein [KO:K02034]
JCM7686_pAMI1p035  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_pAMI1p041  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_pAMI4p014  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_pAMI5p106  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_pAMI5p207  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_pAMI6p085  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_1453  ABC-type dipeptide/oligopeptide/nickel transport systems, permease component [KO:K02034]
JCM7686_1449  peptide/nickel transport system, ATP-binding protein [KO:K02031 K02032]
JCM7686_1703  peptide/nickel transport system, ATP-binding protein [KO:K02031 K02032]
JCM7686_1732  peptide/nickel transport system, ATP-binding protein [KO:K02031 K02032]
JCM7686_1796  peptide/nickel transport system, ATP-binding protein [KO:K02031 K02032]
JCM7686_pAMI5p105  ABC transporter [KO:K02031 K02032]
JCM7686_2849  peptide/nickel transport system, ATP-binding protein [KO:K02031 K02032]
JCM7686_3166  peptide/opine/nickel uptake family ABC transporter, ATP-binding protein [KO:K02031 K02032]
JCM7686_pAMI1p015  ABC transporter, ATP-binding protein [KO:K02031 K02032]
JCM7686_pAMI4p079  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [KO:K02031 K02032]
JCM7686_pAMI4p096  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [KO:K02031 K02032]
JCM7686_pAMI4p166  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [KO:K02031 K02032]
JCM7686_1592  peptide/nickel transport system, ATP-binding protein [KO:K02031]
JCM7686_1744  peptide/nickel transport system, ATP-binding protein [KO:K02031]
JCM7686_0221  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [KO:K02031]
JCM7686_pAMI1p084  ABC-type dipeptide/oligopeptide/nickel transport system, ATP-binding protein [KO:K02031 K02032]
JCM7686_pAMI1p040  ABC transporter, ATP-binding protein [KO:K02031]
JCM7686_pAMI5p206  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [KO:K02031]
JCM7686_pAMI6p086  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [KO:K02031 K02032]
JCM7686_2326  peptide/nickel transport system, ATP-binding protein [KO:K02031]
JCM7686_0177  ABC-type dipeptide/oligopeptide/nickel transporter, ATPase component [KO:K02031]
JCM7686_pAMI4p013  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [KO:K02031]
JCM7686_0178  ABC-type dipeptide/oligopeptide/nickel transporter, ATP-binding protein [KO:K02032]
JCM7686_2327  peptide/nickel transport system, ATP-binding protein [KO:K02032]
JCM7686_pAMI1p039  ABC transporter, ATP-binding protein [KO:K02032]
JCM7686_0220  ABC-type dipeptide/oligopeptide/nickel transport system [KO:K02032]
JCM7686_pAMI5p205  ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [KO:K02032]
JCM7686_2954  inner membrane protein OxaA [KO:K03217]
JCM7686_3227  preprotein translocase, subunit SecE [KO:K03073]
JCM7686_2343  preprotein translocase subunit SecG [KO:K03075]
JCM7686_3188  preprotein translocase subunit SecY [KO:K03076]
JCM7686_0952  preprotein translocase [KO:K03210]
JCM7686_3001  preprotein translocase, SecA subunit [KO:K03070] [EC:7.4.2.8]
JCM7686_0854  fused signal recognition particle receptor [KO:K03110]
JCM7686_3428  protein-export chaperone SecB [KO:K03071]
JCM7686_1039  signal recognition particle GTPase [KO:K03106] [EC:3.6.5.4]
Compound
C00007  Oxygen
C00009  Orthophosphate
C00059  Sulfate
C00232  Succinate semialdehyde
C00334  4-Aminobutanoate
C00547  L-Noradrenaline
C00788  L-Adrenaline
C01019  L-Fucose
C11837  N-Butyryl-L-homoserine lactone
C11841  N-(3-Oxooctanoyl)homoserine lactone
C11844  N-Heptanoylhomoserine lactone
C11845  N-(3-Hydroxy-7-cis-tetradecenoyl)homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16421  AI-2
C16463  3',5'-Cyclic diGMP
C16640  CAI-1
C18049  N-Acyl-L-homoserine lactone
C18206  cis-11-Methyl-2-dodecenoic acid
C20643  2-Heptyl-4(1H)-quinolone
C20677  N-(4-Coumaroyl)-L-homoserine lactone
C20959  (4S)-4-Hydroxy-5-phosphooxypentane-2,3-dione
C21195  N-(3-Hydroxybutanoyl)-L-homoserine lactone
C21197  N-Hexanoyl-L-homoserine lactone
C21198  N-(3-Oxohexanoyl)-L-homoserine lactone
C21199  N-Octanoyl-L-homoserine lactone
C21200  N-3-Hydroxyoctanoyl-L-homoserine lactone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
C21202  cis-2-Dodecenoic acid
C21220  AIP-1
C21221  CSP
C21222  CSP
C21223  Blp
C21224  SHP2
C21225  SHP3
C21226  cCF10
C21227  iCF10
C21228  cAD1
C21229  iAD1
C21230  ComX pheromone
C21231  PhrA pentapeptide
C21232  PhrC pentapeptide
C21233  PhrE pentapeptide
C21234  PhrF pentapeptide
C21235  PhrG pentapeptide
C21236  PhrH pentapeptide
C21237  PhrK pentapeptide
C21238  NprX peptide
C21239  PapR peptide
C21241  AIP-2
C21242  AIP-3
C21243  AIP-4
C21244  AgrD peptide
C21245  AgrD1 peptide
C21246  GBAP
C21382  R-THMF
Reference
PMID:22712853
  Authors
Pereira CS, Thompson JA, Xavier KB
  Title
AI-2-mediated signalling in bacteria.
  Journal
FEMS Microbiol Rev 37:156-81 (2013)
DOI:10.1111/j.1574-6976.2012.00345.x
Reference
PMID:23965960
  Authors
Verma SC, Miyashiro T
  Title
Quorum sensing in the squid-Vibrio symbiosis.
  Journal
Int J Mol Sci 14:16386-401 (2013)
DOI:10.3390/ijms140816386
Reference
PMID:24348467
  Authors
Norsworthy AN, Visick KL
  Title
Gimme shelter: how Vibrio fischeri successfully navigates an animal's multiple environments.
  Journal
Front Microbiol 4:356 (2013)
DOI:10.3389/fmicb.2013.00356
Reference
PMID:24065108
  Authors
Papaioannou E, Utari PD, Quax WJ
  Title
Choosing an appropriate infection model to study quorum sensing inhibition in Pseudomonas infections.
  Journal
Int J Mol Sci 14:19309-40 (2013)
DOI:10.3390/ijms140919309
Reference
PMID:20738404
  Authors
Heeb S, Fletcher MP, Chhabra SR, Diggle SP, Williams P, Camara M
  Title
Quinolones: from antibiotics to autoinducers.
  Journal
FEMS Microbiol Rev 35:247-74 (2011)
DOI:10.1111/j.1574-6976.2010.00247.x
Reference
PMID:25866808
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
PMID:11544214
  Authors
Whiteley M, Greenberg EP
  Title
Promoter specificity elements in Pseudomonas aeruginosa quorum-sensing-controlled genes.
  Journal
J Bacteriol 183:5529-34 (2001)
DOI:10.1128/JB.183.19.5529-5534.2001
Reference
PMID:11497469
  Authors
Chin-A-Woeng TF, van den Broek D, de Voer G, van der Drift KM, Tuinman S, Thomas-Oates JE, Lugtenberg BJ, Bloemberg GV
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pami02040  Flagellar assembly
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