KEGG   PATHWAY: papi00630
Entry
papi00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pandoraea apista
Class
Metabolism; Carbohydrate metabolism
Pathway map
papi00630  Glyoxylate and dicarboxylate metabolism
papi00630

Module
papi_M00012  Glyoxylate cycle [PATH:papi00630]
papi_M00621  Glycine cleavage system [PATH:papi00630]
Other DBs
GO: 0046487 0043648
Organism
Pandoraea apista [GN:papi]
Gene
SG18_18750  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
SG18_22545  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
SG18_23210  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
SG18_13465  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
SG18_15225  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
SG18_18770  malate synthase [KO:K01638] [EC:2.3.3.9]
SG18_09440  malate synthase [KO:K01638] [EC:2.3.3.9]
SG18_16905  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SG18_19830  excisionase [KO:K01647] [EC:2.3.3.1]
SG18_16940  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
SG18_27405  citrate synthase [KO:K01647] [EC:2.3.3.1]
SG18_16895  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SG18_23345  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SG18_21665  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SG18_22270  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SG18_22295  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SG18_10930  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SG18_02730  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SG18_20890  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
SG18_22290  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
SG18_03805  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
SG18_04355  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
SG18_03815  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
SG18_04360  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
SG18_04365  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
SG18_10530  catalase [KO:K03781] [EC:1.11.1.6]
SG18_13375  catalase [KO:K03781] [EC:1.11.1.6]
SG18_10815  glyoxylate reductase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
SG18_12025  dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
SG18_13120  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SG18_04310  2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SG18_04260  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
SG18_06240  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
SG18_01455  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
SG18_17775  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
SG18_01075  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
SG18_08115  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
SG18_08125  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
SG18_22475  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SG18_17465  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SG18_08120  hypothetical protein [KO:K02437]
SG18_18570  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
SG18_18565  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
SG18_18560  tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
SG18_14900  6-phosphogluconate dehydrogenase [KO:K00042] [EC:1.1.1.60]
SG18_23630  glycerate kinase [KO:K00865] [EC:2.7.1.165]
SG18_12395  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
SG18_13135  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SG18_12270  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
SG18_15385  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
SG18_19430  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
SG18_15390  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
SG18_15560  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
SG18_15565  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
SG18_19420  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
SG18_15395  formate dehydrogenase [KO:K00124]
SG18_15570  formate dehydrogenase [KO:K00124]
SG18_19415  formate dehydrogenase [KO:K00124]
SG18_15400  formate dehydrogenase [KO:K00127]
SG18_15575  formate dehydrogenase [KO:K00127]
SG18_19410  formate dehydrogenase [KO:K00127]
SG18_20240  esterase [KO:K01432] [EC:3.5.1.9]
SG18_00975  esterase [KO:K01432] [EC:3.5.1.9]
SG18_01775  kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
SG18_11750  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
SG18_15425  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
SG18_15430  formyl-coenzyme A transferase [KO:K07749] [EC:2.8.3.16]
SG18_15445  formyl-coenzyme A transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
papi00010  Glycolysis / Gluconeogenesis
papi00020  Citrate cycle (TCA cycle)
papi00030  Pentose phosphate pathway
papi00053  Ascorbate and aldarate metabolism
papi00071  Fatty acid degradation
papi00230  Purine metabolism
papi00250  Alanine, aspartate and glutamate metabolism
papi00260  Glycine, serine and threonine metabolism
papi00620  Pyruvate metabolism
papi00710  Carbon fixation by Calvin cycle
papi00750  Vitamin B6 metabolism
papi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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