KEGG   PATHWAY: parc00020
Entry
parc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Parabacteroides sp. CT06
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
parc00020  Citrate cycle (TCA cycle)
parc00020

Module
parc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:parc00020]
parc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:parc00020]
parc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:parc00020]
Other DBs
GO: 0006099
Organism
Parabacteroides sp. CT06 [GN:parc]
Gene
CI960_09095  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CI960_09085  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CI960_09090  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CI960_07390  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
CI960_07400  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CI960_21445  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CI960_11155  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CI960_20265  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CI960_11160  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CI960_20260  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CI960_11165  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CI960_11150  ferredoxin [KO:K00176] [EC:1.2.7.3]
CI960_22290  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CI960_22285  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CI960_22295  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
CI960_20060  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CI960_12835  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
CI960_12840  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
CI960_06395  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CI960_07505  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CI960_13095  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CI960_19645  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
CI960_20255  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CI960_05425  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
parc00010  Glycolysis / Gluconeogenesis
parc00053  Ascorbate and aldarate metabolism
parc00061  Fatty acid biosynthesis
parc00190  Oxidative phosphorylation
parc00220  Arginine biosynthesis
parc00250  Alanine, aspartate and glutamate metabolism
parc00280  Valine, leucine and isoleucine degradation
parc00350  Tyrosine metabolism
parc00470  D-Amino acid metabolism
parc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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