KEGG   PATHWAY: pba00630
Entry
pba00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas brassicacearum subsp. brassicacearum NFM421
Class
Metabolism; Carbohydrate metabolism
Pathway map
pba00630  Glyoxylate and dicarboxylate metabolism
pba00630

Module
pba_M00621  Glycine cleavage system [PATH:pba00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas brassicacearum subsp. brassicacearum NFM421 [GN:pba]
Gene
PSEBR_a3580  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
PSEBR_a2939  putative AMP-binding protein [KO:K01895] [EC:6.2.1.1]
PSEBR_a4820  Acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PSEBR_a4325  Acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PSEBR_a5188  malate synthase G [KO:K01638] [EC:2.3.3.9]
PSEBR_a4145  Citrate synthase [KO:K01647] [EC:2.3.3.1]
PSEBR_a1735  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PSEBR_a3308  Aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PSEBR_a2061  putative acyltransferase [KO:K00626] [EC:2.3.1.9]
PSEBR_a652  Putative acetyl-CoA C-acyltransferase (3-ketoacyl-CoA thiolase) [KO:K00626] [EC:2.3.1.9]
PSEBR_a1904  putative acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase) [KO:K00626] [EC:2.3.1.9]
PSEBR_a2937  putative acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PSEBR_a4006  putative acetyl CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PSEBR_a1228  MaoC-like domain protein [KO:K17865] [EC:4.2.1.55]
PSEBR_a3736  Glycolate oxidase, subunit D [KO:K00104] [EC:1.1.99.14]
PSEBR_a3737  Glycolate oxidase, subunit E [KO:K11472] [EC:1.1.99.14]
PSEBR_a3738  Glycolate oxidase (iron-sulfur), subunit F [KO:K11473] [EC:1.1.99.14]
PSEBR_a32  Catalase HPII [KO:K03781] [EC:1.11.1.6]
PSEBR_a5071  catalase [KO:K03781] [EC:1.11.1.6]
PSEBR_a4890  Catalase [KO:K03781] [EC:1.11.1.6]
PSEBR_a1837  putative catalase [KO:K03781] [EC:1.11.1.6]
PSEBR_a2083  putative catalase [KO:K03781] [EC:1.11.1.6]
PSEBR_a3492  Putative dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PSEBR_a4680  Gluconate 2-dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PSEBR_a866  putative glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
PSEBR_a105  Putative hydrolase [KO:K01091] [EC:3.1.3.18]
PSEBR_a5122  putative phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PSEBR_a4057  putative hydrolase [KO:K01091] [EC:3.1.3.18]
PSEBR_a362  Glutamate--ammonia ligase (Glutamine synthetase) [KO:K01915] [EC:6.3.1.2]
PSEBR_a1859  putative glutamate--ammonia ligase (glutamine synthetase) [KO:K01915] [EC:6.3.1.2]
PSEBR_a1363  putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PSEBR_a2212  putative glutamate--ammonia ligase (glutamine synthetase) [KO:K01915] [EC:6.3.1.2]
PSEBR_a4295  Putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PSEBR_a5405  putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PSEBR_a5406  putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PSEBR_a4691  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PSEBR_a5215  Glycine hydroxymethyltransferase (serine hydroxymethyltransferase) [KO:K00600] [EC:2.1.2.1]
PSEBR_a3880  Glycine hydroxymethyltransferase (serine hydroxymethyltransferase) [KO:K00600] [EC:2.1.2.1]
PSEBR_a4879  Glycine hydroxymethyltransferase (serine hydroxymethyltransferase) [KO:K00600] [EC:2.1.2.1]
PSEBR_a4420  Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
PSEBR_a2219  putative aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
PSEBR_a2222  putative aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
PSEBR_a4422  Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
PSEBR_a5427  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
PSEBR_a3381  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSEBR_a4138  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSEBR_a5619  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSEBR_a4419  Glycine cleavage system H protein [KO:K02437]
PSEBR_a5426  glycine cleavage system H protein [KO:K02437]
PSEBR_a4156  Tartronate-semialdehyde synthase [KO:K01608] [EC:4.1.1.47]
PSEBR_a2230  putative isomerase [KO:K01816] [EC:5.3.1.22]
PSEBR_a4157  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PSEBR_a4158  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
PSEBR_a3401  glycerate kinase [KO:K00865] [EC:2.7.1.165]
PSEBR_a4159  Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
PSEBR_a2977  Lactaldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
PSEBR_a3495  Putative tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PSEBR_a1221  2-dehydro-3-deoxy-phosphogluconate aldolase (KHG/KDPG aldolase, 2-keto-3-deoxy-6-phosphogluconate aldolase) [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PSEBR_a2584  Conserved hypothetical protein [KO:K00126] [EC:1.17.1.9]
PSEBR_a2583  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
PSEBR_a2582  Formate dehydrogenase beta subunit [KO:K00124]
PSEBR_a2581  formate dehydrogenase, gamma subunit [KO:K00127]
PSEBR_a2210  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PSEBR_a2221  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PSEBR_a5210  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PSEBR_a4466  Putative formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PSEBR_a3686  Formamidase [KO:K01455] [EC:3.5.1.49]
PSEBR_a386  Putative formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pba00010  Glycolysis / Gluconeogenesis
pba00020  Citrate cycle (TCA cycle)
pba00030  Pentose phosphate pathway
pba00053  Ascorbate and aldarate metabolism
pba00071  Fatty acid degradation
pba00230  Purine metabolism
pba00250  Alanine, aspartate and glutamate metabolism
pba00260  Glycine, serine and threonine metabolism
pba00620  Pyruvate metabolism
pba00710  Carbon fixation by Calvin cycle
pba00750  Vitamin B6 metabolism
pba00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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