KEGG   PATHWAY: pcad03050
Entry
pcad03050                   Pathway                                
Name
Proteasome - Physeter catodon (sperm whale)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pcad03050  Proteasome
pcad03050

Other DBs
GO: 0000502
Organism
Physeter catodon (sperm whale) [GN:pcad]
Gene
102987990  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
102975107  26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
102973365  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 isoform X1 [KO:K06693]
102984224  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 isoform X1 [KO:K03035]
102979667  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
102980218  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 isoform X2 [KO:K03037]
102981862  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
102993163  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
102976705  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 isoform X1 [KO:K03030]
102996856  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 isoform X1 [KO:K03031]
102980508  SEM1; 26S proteasome complex subunit SEM1 isoform X2 [KO:K10881]
102987409  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 isoform X1 [KO:K03029]
114485514  26S proteasome non-ATPase regulatory subunit 2-like [KO:K03028]
102994557  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
102983623  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
102994946  ADRM1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
102984679  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
102975603  PSMC1; 26S proteasome regulatory subunit 4 [KO:K03062]
102983885  PSMC5; 26S proteasome regulatory subunit 8 [KO:K03066]
102987341  PSMC6; 26S proteasome regulatory subunit 10B [KO:K03064]
102995657  PSMC3; 26S proteasome regulatory subunit 6A [KO:K03065]
102988340  PSMC4; 26S proteasome regulatory subunit 6B [KO:K03063]
102996299  PSME1; proteasome activator complex subunit 1 [KO:K06696]
102987950  LOW QUALITY PROTEIN: proteasome activator complex subunit 2-like [KO:K06697]
102993785  PSME2; proteasome activator complex subunit 2 [KO:K06697]
102990676  PSME3; proteasome activator complex subunit 3 [KO:K06698]
102991628  PSME4; proteasome activator complex subunit 4 [KO:K06699]
102996968  PSMA6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
102991148  LOW QUALITY PROTEIN: proteasome subunit alpha type-6-like [KO:K02730] [EC:3.4.25.1]
102974386  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
102996710  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
102996977  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
102995020  PSMA8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
102994783  PSMA5; proteasome subunit alpha type-5 isoform X1 [KO:K02729] [EC:3.4.25.1]
102990590  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
102976293  PSMA3; proteasome subunit alpha type-3 isoform X1 [KO:K02727] [EC:3.4.25.1]
102978665  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
102989851  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
102989606  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
102973883  PSMB2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
102990397  LOW QUALITY PROTEIN: proteasome subunit beta type-2-like [KO:K02734] [EC:3.4.25.1]
102982265  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
102977137  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
102992487  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
102994888  PSMB9; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
102995777  PSMB10; proteasome subunit beta type-10 [KO:K02733] [EC:3.4.25.1]
102995453  PSMB8; proteasome subunit beta type-8 isoform X1 [KO:K02740] [EC:3.4.25.1]
102981979  PSMB11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
102981551  IFNG; interferon gamma [KO:K04687]
102983179  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
102986343  POMP; proteasome maturation protein [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
pcad04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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