KEGG   PATHWAY: pcad04120
Entry
pcad04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Physeter macrocephalus (sperm whale)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pcad04120  Ubiquitin mediated proteolysis
pcad04120

Other DBs
GO: 0016567
Organism
Physeter macrocephalus (sperm whale) [GN:pcad]
Gene
102973239  [KO:K03875]
102973551  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X2 [KO:K02207] [EC:2.3.2.23]
102973571  [KO:K04649] [EC:2.3.2.23]
102973700  [KO:K10580] [EC:2.3.2.23]
102973769  [KO:K10577]
102974098  CUL7; cullin-7 [KO:K10613]
102974256  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
102974257  CUL4B; cullin-4B isoform X1 [KO:K10609]
102974417  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
102974901  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
102974917  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
102975053  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
102975202  HUWE1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
102975352  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
102975353  UBE4B; ubiquitin conjugation factor E4 B isoform X4 [KO:K10597] [EC:2.3.2.27]
102975369  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
102975529  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X4 [KO:K10686] [EC:6.2.1.64]
102975542  AIRE; autoimmune regulator [KO:K10603]
102975568  UBE3A; ubiquitin-protein ligase E3A isoform X3 [KO:K10587] [EC:2.3.2.26]
102975666  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
102975879  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
102976244  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
102976544  CUL4A; cullin-4A isoform X2 [KO:K10609]
102976552  ELOB; elongin-B [KO:K03873]
102976571  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
102976798  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
102977688  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
102977723  [KO:K25228]
102977916  CUL5; cullin-5 [KO:K10612]
102978007  [KO:K03871]
102978137  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
102978378  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
102978474  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
102978607  [KO:K03873]
102978868  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
102979076  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
102979162  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
102979251  UBE2Q1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
102979645  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
102979908  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
102980065  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
102980125  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
102980187  CDC23; cell division cycle protein 23 homolog [KO:K03355]
102980192  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
102980323  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X2 [KO:K06689] [EC:2.3.2.23]
102980334  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
102980352  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
102980440  [KO:K03094]
102980473  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
102980704  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
102980709  UBE2W; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
102980750  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
102980863  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
102980916  CDC26; anaphase-promoting complex subunit CDC26 isoform X2 [KO:K03359]
102981073  [KO:K10580] [EC:2.3.2.23]
102981131  [KO:K02977]
102981196  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
102981438  UBE2S; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
102981670  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X2 [KO:K10687] [EC:2.3.2.34]
102981700  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
102981926  UBB; polyubiquitin-B [KO:K04551]
102981938  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
102981991  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
102982022  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
102982210  RNF7; RING-box protein 2 isoform X2 [KO:K10611]
102982384  [KO:K03094]
102982410  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
102982702  [KO:K03094]
102982983  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
102983252  CUL3; cullin-3 [KO:K03869]
102983370  [KO:K03094]
102983450  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
102983594  [KO:K10609]
102983895  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X9 [KO:K10608] [EC:2.3.2.27]
102983945  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
102984104  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
102984173  [KO:K03347]
102984749  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
102984777  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
102984833  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
102985067  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X2 [KO:K10598] [EC:5.2.1.8]
102985209  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
102985799  [KO:K10580] [EC:2.3.2.23]
102986385  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
102986409  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
102986454  [KO:K10575] [EC:2.3.2.23]
102986597  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
102986824  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X2 [KO:K10699] [EC:6.2.1.45]
102986928  KEAP1; kelch-like ECH-associated protein 1 isoform X1 [KO:K10456]
102986989  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
102987121  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
102987444  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
102987897  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
102987903  CUL2; cullin-2 [KO:K03870]
102987952  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
102988190  COP1; E3 ubiquitin-protein ligase COP1 isoform X2 [KO:K10143] [EC:2.3.2.27]
102988231  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
102988617  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
102988665  KLHL9; kelch-like protein 9 [KO:K10447]
102989361  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
102989436  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
102989545  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
102989901  [KO:K03868] [EC:2.3.2.32]
102990186  FBXO2; F-box only protein 2 [KO:K10099]
102990237  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
102990503  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
102990611  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
102990840  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
102991021  [KO:K03875]
102991281  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
102991632  [KO:K10684] [EC:6.2.1.45]
102992240  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
102992327  CDC20; cell division cycle protein 20 homolog [KO:K03363]
102992473  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
102992708  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X2 [KO:K10615] [EC:2.3.2.26]
102992710  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
102992915  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X3 [KO:K04706] [EC:2.3.2.-]
102993015  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
102993019  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
102993030  FBXW7; F-box/WD repeat-containing protein 7 isoform X3 [KO:K10260]
102993060  UBE2E2; ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
102993122  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
102993207  TRAF6; TNF receptor-associated factor 6 isoform X2 [KO:K03175] [EC:2.3.2.27]
102993328  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
102993329  [KO:K06689] [EC:2.3.2.23]
102993339  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
102993361  FBXO4; F-box only protein 4 [KO:K10291]
102993376  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
102993461  DET1; DET1 homolog [KO:K10571]
102993527  ELOC; elongin-C isoform X1 [KO:K03872]
102993686  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
102993732  CUL1; LOW QUALITY PROTEIN: cullin-1 [KO:K03347]
102993845  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
102993978  ANAPC15; anaphase-promoting complex subunit 15 isoform X2 [KO:K25228]
102994124  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
102994243  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
102994412  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
102994433  ANAPC10; anaphase-promoting complex subunit 10 isoform X3 [KO:K03357]
102994646  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
102994780  DDB1; DNA damage-binding protein 1 [KO:K10610]
102995011  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
102995121  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
102995312  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
102995363  [KO:K03357]
102995382  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X2 [KO:K06688] [EC:2.3.2.23]
102995467  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
102995617  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
102995919  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X11 [KO:K13305] [EC:2.3.2.26]
102996003  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
102996217  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
102996261  [KO:K10577]
102996519  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
102996730  UBE2D1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
102996950  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
102997043  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
112062207  [KO:K03347]
112064697  [KO:K03868] [EC:2.3.2.32]
112064788  [KO:K10583] [EC:2.3.2.23]
112065788  [KO:K25229]
114485353  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
114486909  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
129391324  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pcad03050  Proteasome
KO pathway
ko04120   

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