KEGG   PATHWAY: pcl00020
Entry
pcl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pyrobaculum calidifontis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcl00020  Citrate cycle (TCA cycle)
pcl00020

Module
pcl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcl00020]
pcl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcl00020]
pcl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcl00020]
pcl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcl00020]
Other DBs
GO: 0006099
Organism
Pyrobaculum calidifontis [GN:pcl]
Gene
Pcal_0154  citrate synthase [KO:K01647] [EC:2.3.3.1]
Pcal_0563  citrate synthase [KO:K01647] [EC:2.3.3.1]
Pcal_0804  aconitase [KO:K01681] [EC:4.2.1.3]
Pcal_0579  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Pcal_1402  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pcal_0561  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pcal_0108  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pcal_0107  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pcal_0560  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pcal_1658  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Pcal_1657  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Pcal_2127  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Pcal_1388  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Pcal_2128  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Pcal_1389  ferredoxin [KO:K00240] [EC:1.3.5.1]
Pcal_2129  succinate dehydrogenase subunit C [KO:K00241]
Pcal_2130  succinate dehydrogenase subunit D [KO:K18860]
Pcal_1060  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Pcal_1059  fumarase beta subunit [KO:K01678] [EC:4.2.1.2]
Pcal_1699  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Pcal_1405  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
Pcal_1404  Transketolase, central region [KO:K00162] [EC:1.2.4.1]
Pcal_1403  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Pcal_0667  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Pcal_1769  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Pcal_2051  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Pcal_2050  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Pcal_0668  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Pcal_1770  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Pcal_2052  pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00172] [EC:1.2.7.1]
Pcal_0665  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Pcal_1767  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Pcal_1768  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Pcal_0666  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcl00010  Glycolysis / Gluconeogenesis
pcl00053  Ascorbate and aldarate metabolism
pcl00061  Fatty acid biosynthesis
pcl00071  Fatty acid degradation
pcl00190  Oxidative phosphorylation
pcl00220  Arginine biosynthesis
pcl00250  Alanine, aspartate and glutamate metabolism
pcl00280  Valine, leucine and isoleucine degradation
pcl00350  Tyrosine metabolism
pcl00470  D-Amino acid metabolism
pcl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system