KEGG   PATHWAY: pcoi00020
Entry
pcoi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Segatella copri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcoi00020  Citrate cycle (TCA cycle)
pcoi00020

Module
pcoi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcoi00020]
pcoi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcoi00020]
Other DBs
GO: 0006099
Organism
Segatella copri [GN:pcoi]
Gene
LK433_06205  hypothetical protein [KO:K01647] [EC:2.3.3.1]
LK433_07040  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LK433_07035  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LK433_03650  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LK433_05220  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LK433_05225  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LK433_05230  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
LK433_05215  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
LK433_02090  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LK433_02085  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LK433_02095  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
LK433_13685  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LK433_00625  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LK433_06575  biotin/lipoyl-binding protein [KO:K01960] [EC:6.4.1.1]
LK433_02800  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LK433_09995  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcoi00010  Glycolysis / Gluconeogenesis
pcoi00053  Ascorbate and aldarate metabolism
pcoi00061  Fatty acid biosynthesis
pcoi00071  Fatty acid degradation
pcoi00190  Oxidative phosphorylation
pcoi00220  Arginine biosynthesis
pcoi00250  Alanine, aspartate and glutamate metabolism
pcoi00280  Valine, leucine and isoleucine degradation
pcoi00350  Tyrosine metabolism
pcoi00470  D-Amino acid metabolism
pcoi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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