KEGG   PATHWAY: pdi00020
Entry
pdi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Parabacteroides distasonis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pdi00020  Citrate cycle (TCA cycle)
pdi00020

Module
pdi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pdi00020]
pdi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pdi00020]
Other DBs
GO: 0006099
Organism
Parabacteroides distasonis [GN:pdi]
Gene
BDI_1076  citrate synthase [KO:K01647] [EC:2.3.3.1]
BDI_1074  putative aconitase [KO:K01681] [EC:4.2.1.3]
BDI_1075  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BDI_0688  lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BDI_3052  alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BDI_0690  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BDI_1391  ketoisovalerate oxidoreductase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BDI_2807  putative oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BDI_1392  ketoisovalerate oxidoreductase subunit VorA [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BDI_2806  oxidoreductase, putative [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BDI_1393  ketoisovalerate oxidoreductase subunit vorA [KO:K00177] [EC:1.2.7.3]
BDI_3209  fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BDI_3208  fumarate reductase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BDI_3210  putative cytochrome B subunit [KO:K00241]
BDI_2765  fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
BDI_1650  fumarase [KO:K01679] [EC:4.2.1.2]
BDI_0711  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BDI_0389  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BDI_2683  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
BDI_2805  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pdi00010  Glycolysis / Gluconeogenesis
pdi00053  Ascorbate and aldarate metabolism
pdi00061  Fatty acid biosynthesis
pdi00190  Oxidative phosphorylation
pdi00220  Arginine biosynthesis
pdi00250  Alanine, aspartate and glutamate metabolism
pdi00280  Valine, leucine and isoleucine degradation
pdi00350  Tyrosine metabolism
pdi00470  D-Amino acid metabolism
pdi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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