KEGG   PATHWAY: pdul00630
Entry
pdul00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Prunus dulcis (almond)
Class
Metabolism; Carbohydrate metabolism
Pathway map
pdul00630  Glyoxylate and dicarboxylate metabolism
pdul00630

Module
pdul_M00012  Glyoxylate cycle [PATH:pdul00630]
pdul_M00532  Photorespiration [PATH:pdul00630]
pdul_M00621  Glycine cleavage system [PATH:pdul00630]
Other DBs
GO: 0046487 0043648
Organism
Prunus dulcis (almond) [GN:pdul]
Gene
117620574  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
117612465  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
117632361  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
117627996  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
117627533  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
117616179  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
117624715  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
117624411  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
117624620  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
117636701  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
117627410  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
117617727  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
117620686  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
117620780  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
117636143  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
117623097  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
117626007  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
117622051  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
117623947  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
117625720  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
117627569  catalase isozyme 1-like isoform X1 [KO:K03781] [EC:1.11.1.6]
117627570  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
117619435  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
117619199  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
117619434  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
117621421  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
117634354  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
117634030  glycerate dehydrogenase-like [KO:K15893] [EC:1.1.1.29]
117637171  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
117632233  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
117623852  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
117635816  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
32882954  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
117623153  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
117635254  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
117625684  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
117624013  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
117624640  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
117633614  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
117621563  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
117625588  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
117637251  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
117627424  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
117629988  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
117621495  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
117622879  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
117634658  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
117637944  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
117638829  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
117623292  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
117624404  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
117630502  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
117616079  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
117627846  glycine cleavage system H protein, mitochondrial [KO:K02437]
117626390  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
117626766  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
117623225  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
117612681  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
117621469  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
117627059  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
117631949  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
117627231  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pdul00010  Glycolysis / Gluconeogenesis
pdul00020  Citrate cycle (TCA cycle)
pdul00030  Pentose phosphate pathway
pdul00053  Ascorbate and aldarate metabolism
pdul00071  Fatty acid degradation
pdul00230  Purine metabolism
pdul00250  Alanine, aspartate and glutamate metabolism
pdul00260  Glycine, serine and threonine metabolism
pdul00620  Pyruvate metabolism
pdul00710  Carbon fixation by Calvin cycle
pdul00750  Vitamin B6 metabolism
pdul00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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