KEGG   PATHWAY: pdw00970
Entry
pdw00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Pseudomonas donghuensis
Class
Genetic Information Processing; Translation
Pathway map
pdw00970  Aminoacyl-tRNA biosynthesis
pdw00970

Organism
Pseudomonas donghuensis [GN:pdw]
Gene
BV82_19120  tRNA-Ala [KO:K14218]
BV82_19130  tRNA-Ala [KO:K14218]
BV82_01315  tRNA-Ala [KO:K14218]
BV82_03880  tRNA-Ala [KO:K14218]
BV82_09590  tRNA-Ala [KO:K14218]
BV82_20615  tRNA-Ala [KO:K14218]
BV82_22955  tRNA-Ala [KO:K14218]
BV82_24315  tRNA-Ala [KO:K14218]
BV82_09220  tRNA-Arg [KO:K14219]
BV82_07925  tRNA-Arg [KO:K14219]
BV82_07930  tRNA-Arg [KO:K14219]
BV82_07935  tRNA-Arg [KO:K14219]
BV82_01525  tRNA-Arg [KO:K14219]
BV82_07965  tRNA-Arg [KO:K14219]
BV82_19150  tRNA-Asn [KO:K14220]
BV82_22835  tRNA-Asn [KO:K14220]
BV82_18980  tRNA-Asp [KO:K14221]
BV82_18985  tRNA-Asp [KO:K14221]
BV82_18990  tRNA-Asp [KO:K14221]
BV82_20190  tRNA-Asp [KO:K14221]
BV82_16590  tRNA-Cys [KO:K14222]
BV82_04425  tRNA-Gln [KO:K14223]
BV82_16820  tRNA-Gln [KO:K14223]
BV82_19115  tRNA-Glu [KO:K14224]
BV82_19125  tRNA-Glu [KO:K14224]
BV82_19345  tRNA-Glu [KO:K14224]
BV82_19355  tRNA-Glu [KO:K14224]
BV82_12140  tRNA-Gly [KO:K14225]
BV82_19335  tRNA-Gly [KO:K14225]
BV82_19340  tRNA-Gly [KO:K14225]
BV82_19350  tRNA-Gly [KO:K14225]
BV82_24280  tRNA-Gly [KO:K14225]
BV82_21450  tRNA-Gly [KO:K14225]
BV82_09225  tRNA-His [KO:K14226]
BV82_09235  tRNA-His [KO:K14226]
BV82_01310  tRNA-Ile [KO:K14227]
BV82_03875  tRNA-Ile [KO:K14227]
BV82_09585  tRNA-Ile [KO:K14227]
BV82_20620  tRNA-Ile [KO:K14227]
BV82_22960  tRNA-Ile [KO:K14227]
BV82_24320  tRNA-Ile [KO:K14227]
BV82_09230  tRNA-Leu [KO:K14228]
BV82_09240  tRNA-Leu [KO:K14228]
BV82_03180  tRNA-Leu [KO:K14228]
BV82_03185  tRNA-Leu [KO:K14228]
BV82_23180  tRNA-Leu [KO:K14228]
BV82_05095  tRNA-Leu [KO:K14228]
BV82_16445  tRNA-Leu [KO:K14228]
BV82_06995  tRNA-Lys [KO:K14229]
BV82_22825  tRNA-Lys [KO:K14229]
BV82_06865  tRNA-Met [KO:K14230]
BV82_06870  tRNA-Met [KO:K14230]
BV82_23175  tRNA-Met [KO:K14230]
BV82_24590  tRNA-Ile [KO:K14230]
BV82_04375  tRNA-Met [KO:K14230]
BV82_25155  tRNA-Phe [KO:K14231]
BV82_18570  tRNA-Pro [KO:K14232]
BV82_17425  tRNA-Pro [KO:K14232]
BV82_22820  tRNA-Pro [KO:K14232]
BV82_22830  tRNA-Pro [KO:K14232]
BV82_07920  tRNA-Ser [KO:K14233]
BV82_19540  tRNA-Ser [KO:K14233]
BV82_07110  tRNA-Ser [KO:K14233]
BV82_10135  tRNA-Ser [KO:K14233]
BV82_22755  tRNA-Thr [KO:K14234]
BV82_24275  tRNA-Thr [KO:K14234]
BV82_25250  tRNA-Thr [KO:K14234]
BV82_24265  tRNA-Trp [KO:K14235]
BV82_24285  tRNA-Tyr [KO:K14236]
BV82_18995  tRNA-Val [KO:K14237]
BV82_20195  tRNA-Val [KO:K14237]
BV82_17565  tRNA-Val [KO:K14237]
BV82_17570  tRNA-Val [KO:K14237]
BV82_23970  tRNA-Sec [KO:K14238]
BV82_4040  glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
BV82_0310  gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
BV82_0309  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
BV82_0311  gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
BV82_3797  glutamine--tRNA ligase/YqeY domain fusion protein [KO:K01886] [EC:6.1.1.18]
BV82_0816  alaS; alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
BV82_0613  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
BV82_2309  glyQ; glycine--tRNA ligase subunit alpha [KO:K01878] [EC:6.1.1.14]
BV82_2308  glycine--tRNA ligase subunit beta [KO:K01879] [EC:6.1.1.14]
BV82_3707  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
BV82_1259  serS; serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
BV82_5012  L-seryl-tRNA(Sec) selenium transferase [KO:K01042] [EC:2.9.1.1]
BV82_3796  cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
BV82_4403  metG; methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
BV82_2315  fmt; methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
BV82_13620  formyl transferase [KO:K00604] [EC:2.1.2.9]
BV82_0356  valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
BV82_4922  leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
BV82_4800  ileS; isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
BV82_0491  lysS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
BV82_2554  argS; arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
BV82_0605  proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
BV82_0265  hisS; histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
BV82_3703  pheS; phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
BV82_3702  pheT; phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
BV82_1945  tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
BV82_4662  tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
pdw00250  Alanine, aspartate and glutamate metabolism
pdw00260  Glycine, serine and threonine metabolism
pdw00270  Cysteine and methionine metabolism
pdw00290  Valine, leucine and isoleucine biosynthesis
pdw00300  Lysine biosynthesis
pdw00330  Arginine and proline metabolism
pdw00340  Histidine metabolism
pdw00380  Tryptophan metabolism
pdw00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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