KEGG   PATHWAY: pdy00010
Entry
pdy00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Paenibacillus dendritiformis
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pdy00010  Glycolysis / Gluconeogenesis
pdy00010

Module
pdy_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:pdy00010]
pdy_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pdy00010]
pdy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pdy00010]
pdy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pdy00010]
Other DBs
GO: 0006096 0006094
Organism
Paenibacillus dendritiformis [GN:pdy]
Gene
QJQ58_26780  ROK family protein [KO:K25026] [EC:2.7.1.2]
QJQ58_21700  ROK family glucokinase [KO:K25026] [EC:2.7.1.2]
QJQ58_28060  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
QJQ58_01120  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
QJQ58_15230  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
QJQ58_13705  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
QJQ58_21960  fba; class II fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
QJQ58_21510  tpiA; triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
QJQ58_21520  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
QJQ58_29825  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00150] [EC:1.2.1.59]
QJQ58_21515  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
QJQ58_26525  gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
QJQ58_10470  histidine phosphatase family protein [KO:K01834] [EC:5.4.2.11]
QJQ58_18160  histidine phosphatase family protein [KO:K01834] [EC:5.4.2.11]
QJQ58_21615  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
QJQ58_21505  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
QJQ58_25430  apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15635] [EC:5.4.2.12]
QJQ58_21500  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
QJQ58_00650  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
QJQ58_29815  ppdK; pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
QJQ58_04995  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QJQ58_05000  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
QJQ58_05005  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
QJQ58_17540  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
QJQ58_03745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QJQ58_05010  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QJQ58_17535  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QJQ58_13890  thiamine pyrophosphate-dependent enzyme [KO:K00169] [EC:1.2.7.1]
QJQ58_13895  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
QJQ58_11050  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
QJQ58_11045  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QJQ58_10960  L-lactate dehydrogenase [KO:K00016] [EC:1.1.1.27]
QJQ58_10270  zinc-dependent alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
QJQ58_03195  adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
QJQ58_08105  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
QJQ58_15405  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
QJQ58_12340  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
QJQ58_16095  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
QJQ58_20505  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
QJQ58_13655  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
QJQ58_00905  6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
QJQ58_19360  PTS glucose transporter subunit IIA [KO:K02777] [EC:2.7.1.-]
QJQ58_19340  ptsG; glucose-specific PTS transporter subunit IIBC [KO:K02791] [EC:2.7.1.199 2.7.1.208]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pdy00020  Citrate cycle (TCA cycle)
pdy00030  Pentose phosphate pathway
pdy00500  Starch and sucrose metabolism
pdy00620  Pyruvate metabolism
pdy00640  Propanoate metabolism
pdy00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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