KEGG   PATHWAY: pecq00630
Entry
pecq00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudonocardia sp. EC080619-01
Class
Metabolism; Carbohydrate metabolism
Pathway map
pecq00630  Glyoxylate and dicarboxylate metabolism
pecq00630

Module
pecq_M00012  Glyoxylate cycle [PATH:pecq00630]
pecq_M00621  Glycine cleavage system [PATH:pecq00630]
pecq_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pecq00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudonocardia sp. EC080619-01 [GN:pecq]
Gene
AD017_15995  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
AD017_22470  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
AD017_08205  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AD017_23295  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AD017_11415  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
AD017_06085  malate synthase [KO:K01638] [EC:2.3.3.9]
AD017_02390  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AD017_16000  citrate synthase [KO:K01647] [EC:2.3.3.1]
AD017_16020  citrate synthase [KO:K01647] [EC:2.3.3.1]
AD017_06975  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AD017_10505  hypothetical protein [KO:K01647] [EC:2.3.3.1]
AD017_10520  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
AD017_27460  hypothetical protein [KO:K01647] [EC:2.3.3.1]
AD017_25090  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AD017_12745  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_10385  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_14665  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_09470  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_14885  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_18935  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_28390  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_28475  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_28555  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_28365  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AD017_06995  3-oxoacyl-ACP synthase [KO:K00023] [EC:1.1.1.36]
AD017_08180  dehydratase [KO:K17865] [EC:4.2.1.55]
AD017_18930  glyoxalase [KO:K05606] [EC:5.1.99.1]
AD017_18800  protein meaA [KO:K14447] [EC:5.4.99.63]
AD017_08165  acetyl-COA carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
AD017_17920  acetyl-COA carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
AD017_17980  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
AD017_17975  acetyl-CoA carboxylase [KO:K27095]
AD017_28020  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AD017_28025  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AD017_06090  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AD017_06345  FAD-linked oxidase [KO:K00104] [EC:1.1.99.14]
AD017_31415  FAD-linked oxidase [KO:K00104] [EC:1.1.99.14]
AD017_06095  dehydrogenase [KO:K11472] [EC:1.1.99.14]
AD017_06100  glycolate oxidase [KO:K11473] [EC:1.1.99.14]
AD017_11635  catalase [KO:K03781] [EC:1.11.1.6]
AD017_22575  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
AD017_18855  rbcL; ribulose 1,5-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
AD017_18850  ribulose 1,5-bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
AD017_22405  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
AD017_06730  hypothetical protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
AD017_03005  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AD017_03055  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AD017_18720  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AD017_07325  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AD017_27810  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
AD017_22755  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AD017_22725  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AD017_26600  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AD017_27835  hypothetical protein [KO:K02437]
AD017_25185  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
AD017_25195  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
AD017_25190  tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
AD017_22780  hypothetical protein [KO:K00865] [EC:2.7.1.165]
AD017_25180  glycerate kinase [KO:K00865] [EC:2.7.1.165]
AD017_10175  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
AD017_00005  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AD017_25230  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AD017_18515  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AD017_30340  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
AD017_32355  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
AD017_20785  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AD017_20790  dehydrogenase [KO:K00123] [EC:1.17.1.9]
AD017_20780  ferredoxin [KO:K00124]
AD017_07280  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AD017_10620  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AD017_13215  formamidase [KO:K01455] [EC:3.5.1.49]
AD017_01550  formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pecq00010  Glycolysis / Gluconeogenesis
pecq00020  Citrate cycle (TCA cycle)
pecq00030  Pentose phosphate pathway
pecq00053  Ascorbate and aldarate metabolism
pecq00071  Fatty acid degradation
pecq00230  Purine metabolism
pecq00250  Alanine, aspartate and glutamate metabolism
pecq00260  Glycine, serine and threonine metabolism
pecq00620  Pyruvate metabolism
pecq00710  Carbon fixation by Calvin cycle
pecq00750  Vitamin B6 metabolism
pecq00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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