KEGG   PATHWAY: pez02025
Entry
pez02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas eucalypticola
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pez02025  Biofilm formation - Pseudomonas aeruginosa
pez02025

Organism
Pseudomonas eucalypticola [GN:pez]
Gene
HWQ56_27020  type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein [KO:K02660]
HWQ56_27025  chemotaxis protein CheW [KO:K02659]
HWQ56_27015  Hpt domain-containing protein [KO:K06596]
HWQ56_27010  chemotaxis protein CheW [KO:K06598]
HWQ56_27030  pilH; twitching motility response regulator PilH [KO:K02658]
HWQ56_27035  pilG; twitching motility response regulator PilG [KO:K02657]
HWQ56_02640  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
HWQ56_22960  cyclic nucleotide-binding domain-containing protein [KO:K10914]
HWQ56_26080  crp; cAMP-activated global transcriptional regulator CRP [KO:K10914]
HWQ56_07350  sigma-54-dependent Fis family transcriptional regulator [KO:K10941]
HWQ56_24810  LuxR family transcriptional regulator [KO:K18304]
HWQ56_26105  anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
HWQ56_26100  aminodeoxychorismate/anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
HWQ56_22550  response regulator [KO:K07678] [EC:2.7.13.3]
HWQ56_25280  response regulator [KO:K20971]
HWQ56_03150  response regulator [KO:K20972]
HWQ56_17610  uvrY; UvrY/SirA/GacA family response regulator transcription factor [KO:K07689]
HWQ56_06700  csrA; carbon storage regulator CsrA [KO:K03563]
HWQ56_07135  csrA; carbon storage regulator CsrA [KO:K03563]
HWQ56_17555  csrA; carbon storage regulator CsrA [KO:K03563]
HWQ56_20935  response regulator [KO:K20973] [EC:2.7.13.3]
HWQ56_08775  response regulator [KO:K20974] [EC:2.7.13.3]
HWQ56_07405  Hpt domain-containing protein [KO:K20976]
HWQ56_07400  fused response regulator/phosphatase [KO:K20977]
HWQ56_07395  STAS domain-containing protein [KO:K20978]
HWQ56_07235  flgM; flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
HWQ56_27530  flgM; flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
HWQ56_07470  RNA polymerase sigma factor FliA [KO:K02405]
HWQ56_27340  RNA polymerase sigma factor FliA [KO:K02405]
HWQ56_00695  tagF; type VI secretion system-associated protein TagF [KO:K11890]
HWQ56_00690  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
HWQ56_00700  ImcF-like family protein [KO:K11891]
HWQ56_00710  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
HWQ56_00680  tssA; type VI secretion system protein TssA [KO:K11902]
HWQ56_00745  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
HWQ56_00740  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
HWQ56_00685  type VI secretion system tube protein Hcp [KO:K11903]
HWQ56_00725  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
HWQ56_00720  tssH; type VI secretion system ATPase TssH [KO:K11907]
HWQ56_06130  methyl-accepting chemotaxis protein [KO:K13487]
HWQ56_06150  hybrid sensor histidine kinase/response regulator [KO:K13490]
HWQ56_06135  purine-binding chemotaxis protein CheW [KO:K13488]
HWQ56_06145  purine-binding chemotaxis protein CheW [KO:K13489]
HWQ56_06155  chemotaxis response regulator protein-glutamate methylesterase [KO:K13491] [EC:3.1.1.61]
HWQ56_06160  PleD family two-component system response regulator [KO:K11444] [EC:2.7.7.65]
HWQ56_17030  GGDEF domain-containing protein [KO:K21019] [EC:2.7.7.65]
HWQ56_23730  GGDEF domain-containing protein [KO:K21019] [EC:2.7.7.65]
HWQ56_13395  diguanylate cyclase [KO:K21022] [EC:2.7.7.65]
HWQ56_11435  EAL domain-containing protein [KO:K21023] [EC:2.7.7.65]
HWQ56_23820  EAL domain-containing protein [KO:K21024] [EC:3.1.4.52]
HWQ56_09950  undecaprenyl-phosphate glucose phosphotransferase [KO:K20997]
HWQ56_04995  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
HWQ56_09945  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
HWQ56_09940  polysaccharide export protein [KO:K20987]
HWQ56_09935  lipopolysaccharide biosynthesis protein [KO:K20998]
HWQ56_09930  glycosyltransferase [KO:K20999]
HWQ56_09925  cellulase family glycosylhydrolase [KO:K21000]
HWQ56_26350  hypothetical protein [KO:K21000]
HWQ56_09920  glycosyltransferase family 4 protein [KO:K21001]
HWQ56_09915  glycosyltransferase family 4 protein [KO:K21002]
HWQ56_09910  O-antigen ligase family protein [KO:K21003]
HWQ56_09900  polysaccharide biosynthesis C-terminal domain-containing protein [KO:K21004]
HWQ56_05040  PilZ domain-containing protein [KO:K19291] [EC:2.4.1.33]
HWQ56_02690  molecular chaperone [KO:K23127]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
pez02024  Quorum sensing
pez02040  Flagellar assembly
pez03070  Bacterial secretion system
KO pathway
ko02025   
LinkDB

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