KEGG   PATHWAY: pfh00020
Entry
pfh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Plasmodium falciparum HB3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfh00020  Citrate cycle (TCA cycle)
pfh00020

Module
pfh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfh00020]
pfh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfh00020]
Other DBs
GO: 0006099
Organism
Plasmodium falciparum HB3 [GN:pfh]
Gene
PFHG_04113  hypothetical protein [KO:K01647] [EC:2.3.3.1]
PFHG_02118  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PFHG_02400  isocitrate dehydrogenase, mitochondrial precursor [KO:K00031] [EC:1.1.1.42]
PFHG_02520  2-oxoglutarate dehydrogenase e1 component [KO:K00164] [EC:1.2.4.2]
PFHG_04508  hypothetical protein similar to 2-oxoglutarate dehydrogenase complex E2 component [KO:K00658] [EC:2.3.1.61]
PFHG_01031  lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PFHG_04701  succinyl-CoA ligase subunit alpha, mitochondrial precursor [KO:K01899] [EC:6.2.1.4 6.2.1.5]
PFHG_00507  hypothetical protein similar to succinyl-coa ligase beta-chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
PFHG_01332  flavoprotein subunit of succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
PFHG_02795  iron-sulfur subunit of succinate dehydrogenase [KO:K00235] [EC:1.3.5.1]
PFHG_05018  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
PFHG_00586  hypothetical protein similar to quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PFHG_02125  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PFHG_04361  hypothetical protein similar to pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
PFHG_04074  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PFHG_01505  hypothetical protein similar to dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfh00010  Glycolysis / Gluconeogenesis
pfh00061  Fatty acid biosynthesis
pfh00062  Fatty acid elongation
pfh00071  Fatty acid degradation
pfh00190  Oxidative phosphorylation
pfh00220  Arginine biosynthesis
pfh00250  Alanine, aspartate and glutamate metabolism
pfh00280  Valine, leucine and isoleucine degradation
pfh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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