KEGG   PATHWAY: pgu00020
Entry
pgu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Meyerozyma guilliermondii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pgu00020  Citrate cycle (TCA cycle)
pgu00020

Module
pgu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pgu00020]
pgu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pgu00020]
pgu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pgu00020]
Other DBs
GO: 0006099
Organism
Meyerozyma guilliermondii [GN:pgu]
Gene
PGUG_00307  citrate synthase, mitochondrial precursor [KO:K01647] [EC:2.3.3.1]
PGUG_00102  hypothetical protein [KO:K01681] [EC:4.2.1.3]
PGUG_03659  isocitrate dehydrogenase, mitochondrial precursor [KO:K00031] [EC:1.1.1.42]
PGUG_02805  isocitrate dehydrogenase peroxisomal [KO:K00031] [EC:1.1.1.42]
PGUG_02910  similar to isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
PGUG_03146  similar to mitochondrial isocitrate dehydrogenase1 [KO:K00030] [EC:1.1.1.41]
PGUG_03460  similar to 2-oxoglutarate dehydrogenase complex subunit E1 [KO:K00164] [EC:1.2.4.2]
PGUG_03476  similar to 2-oxoglutarate dehydrogenase complex E2 component [KO:K00658] [EC:2.3.1.61]
PGUG_01180  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PGUG_02787  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
PGUG_04080  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
PGUG_05465  similar to succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
PGUG_03289  similar to succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
PGUG_00504  hypothetical protein [KO:K00237]
PGUG_04469  hypothetical protein [KO:K00237]
PGUG_01341  similar to fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PGUG_00963  hypothetical protein [KO:K01679] [EC:4.2.1.2]
PGUG_02579  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PGUG_01503  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PGUG_02540  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PGUG_03757  hypothetical protein [KO:K01958] [EC:6.4.1.1]
PGUG_01239  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PGUG_04335  similar to pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
PGUG_03763  hypothetical protein [KO:K00162] [EC:1.2.4.1]
PGUG_00150  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pgu00010  Glycolysis / Gluconeogenesis
pgu00053  Ascorbate and aldarate metabolism
pgu00061  Fatty acid biosynthesis
pgu00062  Fatty acid elongation
pgu00071  Fatty acid degradation
pgu00190  Oxidative phosphorylation
pgu00220  Arginine biosynthesis
pgu00250  Alanine, aspartate and glutamate metabolism
pgu00280  Valine, leucine and isoleucine degradation
pgu00350  Tyrosine metabolism
pgu00470  D-Amino acid metabolism
pgu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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