KEGG   PATHWAY: pha03440
Entry
pha03440                    Pathway                                
Name
Homologous recombination - Pseudoalteromonas translucida TAC125
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
pha03440  Homologous recombination
pha03440

Other DBs
GO: 0000724
Organism
Pseudoalteromonas translucida TAC125 [GN:pha]
Gene
PSHAa0516  recJ; Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific [KO:K07462] [EC:3.1.-.-]
PSHAa2705  ssb; Single-strand binding protein (SSB) (Helix-destabilizing protein) [KO:K03111]
PSHAa0003  recF; gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction [KO:K03629]
PSHAa0734  recO; DNA repair protein recO (Recombination protein O) [KO:K03584]
PSHAa1203  recR; recombination protein recR [KO:K06187]
PSHAa0694  recA; RecA protein (Recombinase A) [KO:K03553]
PSHAa2757  polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [KO:K02335] [EC:2.7.7.7]
PSHAa1876  ruvA; Holliday junction helicase, subunit A [KO:K03550]
PSHAa1875  ruvB; Holliday junction helicase, subunit B [KO:K03551] [EC:5.6.2.4]
PSHAa1877  ruvC; Holliday junction nuclease [KO:K01159] [EC:3.1.21.10]
PSHAa2799  recG; ATP-dependent DNA helicase recG [KO:K03655] [EC:5.6.2.4]
PSHAa1858  recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [KO:K03582] [EC:3.1.11.5]
PSHAa1859  recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [KO:K03583] [EC:3.1.11.5]
PSHAa1857  recD; exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [KO:K03581] [EC:3.1.11.5]
PSHAa2015  dnaE; DNA polymerase III, alpha subunit; the entire polymerase contains 10 subunits [KO:K02337] [EC:2.7.7.7]
PSHAa0002  dnaN; DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III [KO:K02338] [EC:2.7.7.7]
PSHAa1201  putative DnaX, DNA polymerase III, gamma/tau subunits [KO:K02343] [EC:2.7.7.7]
PSHAa1029  holA; Putative DNA polymerase III, delta subunit, probably ATP hydrolase [KO:K02340] [EC:2.7.7.7]
PSHAa1802  holB; putative DNA polymerase III delta' subunit [KO:K02341] [EC:2.7.7.7]
PSHAa1435  putative DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
PSHAa1963  dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [KO:K02342] [EC:2.7.7.7]
PSHAa0589  putative DNA polymerase, exonuclease activity [KO:K02342] [EC:2.7.7.7]
PSHAa1996  conserved protein of unknown function; putative enzyme [KO:K02342] [EC:2.7.7.7]
PSHAa2424  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
PSHAa2728  priA; Primosome factor Y, also called protein n'; ATP-dependent DNA helicase activity required for recA-dependent stable DNA replication mode; also involved in double-strand break repair [KO:K04066] [EC:5.6.2.4]
PSHAa2441  priB; primosomal replication protein N [KO:K02686]
PSHAa1993  conserved protein of unknown function [KO:K04067]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   
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