KEGG   PATHWAY: phai00630
Entry
phai00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Panicum hallii (Hall's panicgrass)
Class
Metabolism; Carbohydrate metabolism
Pathway map
phai00630  Glyoxylate and dicarboxylate metabolism
phai00630

Module
phai_M00012  Glyoxylate cycle [PATH:phai00630]
phai_M00532  Photorespiration [PATH:phai00630]
phai_M00621  Glycine cleavage system [PATH:phai00630]
Other DBs
GO: 0046487 0043648
Organism
Panicum hallii (Hall's panicgrass) [GN:phai]
Gene
112883300  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
112899070  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
112880727  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
112876023  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
112876869  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
112899326  malate synthase, glyoxysomal isoform X1 [KO:K01638] [EC:2.3.3.9]
112900134  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
112875553  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
112883982  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
112897230  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
112886032  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
112886445  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
112876042  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
112879442  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
112890831  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
112878748  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
112896475  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112898997  putative aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
112875173  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112881232  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112884839  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
112879457  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
112892287  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
112899466  peroxisomal (S)-2-hydroxy-acid oxidase GLO2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
112899467  peroxisomal (S)-2-hydroxy-acid oxidase GLO2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
112875342  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
112901535  peroxisomal (S)-2-hydroxy-acid oxidase GLO3 [KO:K11517] [EC:1.1.3.15]
112880057  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [KO:K11517] [EC:1.1.3.15]
112880573  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
112887553  catalase isozyme 3 [KO:K03781] [EC:1.11.1.6]
112875070  catalase-1 [KO:K03781] [EC:1.11.1.6]
112889320  catalase isozyme B [KO:K03781] [EC:1.11.1.6]
112899402  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112899404  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112900032  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112892255  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
112892526  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
112899994  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
112883234  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
112899704  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
112902360  LOW QUALITY PROTEIN: uncharacterized protein LOC112902360 [KO:K01601] [EC:4.1.1.39]
112883790  uncharacterized protein LOC112883790 isoform X1 [KO:K01602] [EC:4.1.1.39]
112883792  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112884337  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112886942  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112886960  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112888010  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112896728  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
112882121  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
112879687  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
112874674  glutamine synthetase root isozyme 5 [KO:K01915] [EC:6.3.1.2]
112899796  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
112875324  glutamine synthetase root isozyme 2 [KO:K01915] [EC:6.3.1.2]
112888810  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
112886237  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
112876228  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
112902407  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
112891548  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
112893015  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
112892290  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
112899465  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
112894117  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
112895328  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
112885869  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
112886312  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
112883855  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
112895596  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
112889888  formate dehydrogenase 1, mitochondrial [KO:K00122] [EC:1.17.1.9]
112894723  formyltetrahydrofolate deformylase 2, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
112874927  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
112891490  LOW QUALITY PROTEIN: uncharacterized protein LOC112891490 [KO:K01455] [EC:3.5.1.49]
112892371  pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like [KO:K01455] [EC:3.5.1.49]
112899342  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
phai00010  Glycolysis / Gluconeogenesis
phai00020  Citrate cycle (TCA cycle)
phai00030  Pentose phosphate pathway
phai00053  Ascorbate and aldarate metabolism
phai00071  Fatty acid degradation
phai00230  Purine metabolism
phai00250  Alanine, aspartate and glutamate metabolism
phai00260  Glycine, serine and threonine metabolism
phai00620  Pyruvate metabolism
phai00710  Carbon fixation by Calvin cycle
phai00750  Vitamin B6 metabolism
phai00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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