KEGG   PATHWAY: phis00020
Entry
phis00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Prevotella histicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
phis00020  Citrate cycle (TCA cycle)
phis00020

Module
phis_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:phis00020]
phis_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:phis00020]
Other DBs
GO: 0006099
Organism
Prevotella histicola [GN:phis]
Gene
J5A62_03750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J5A62_00280  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
J5A62_03170  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
J5A62_00285  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
J5A62_03175  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
J5A62_03180  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
J5A62_03165  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
J5A62_04925  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J5A62_04920  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J5A62_08150  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J5A62_08145  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J5A62_08155  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
J5A62_05545  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
J5A62_06815  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J5A62_02585  biotin/lipoyl-binding protein [KO:K01960] [EC:6.4.1.1]
J5A62_00350  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
J5A62_10710  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
phis00010  Glycolysis / Gluconeogenesis
phis00061  Fatty acid biosynthesis
phis00190  Oxidative phosphorylation
phis00220  Arginine biosynthesis
phis00250  Alanine, aspartate and glutamate metabolism
phis00280  Valine, leucine and isoleucine degradation
phis00350  Tyrosine metabolism
phis00470  D-Amino acid metabolism
phis00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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