KEGG   PATHWAY: pkh02025
Entry
pkh02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas khazarica
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pkh02025  Biofilm formation - Pseudomonas aeruginosa
pkh02025

Organism
Pseudomonas khazarica [GN:pkh]
Gene
JLK41_01970  type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein [KO:K02660]
JLK41_01965  chemotaxis protein CheW [KO:K02659]
JLK41_01980  Hpt domain-containing protein [KO:K06596]
JLK41_01990  chemotaxis protein CheW [KO:K06598]
JLK41_01960  pilH; twitching motility response regulator PilH [KO:K02658]
JLK41_01955  pilG; twitching motility response regulator PilG [KO:K02657]
JLK41_09880  adenylate cyclase [KO:K01768] [EC:4.6.1.1]
JLK41_02925  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
JLK41_09640  cyclic nucleotide-binding domain-containing protein [KO:K10914]
JLK41_21850  crp; cAMP-activated global transcriptional regulator CRP [KO:K10914]
JLK41_23910  Crp/Fnr family transcriptional regulator [KO:K10914]
JLK41_16185  sigma-54-dependent Fis family transcriptional regulator [KO:K10941]
JLK41_21870  anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
JLK41_21865  aminodeoxychorismate/anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
JLK41_09365  response regulator [KO:K07678] [EC:2.7.13.3]
JLK41_20900  response regulator [KO:K20971]
JLK41_03620  response regulator [KO:K20972]
JLK41_16880  response regulator [KO:K20972]
JLK41_12385  uvrY; UvrY/SirA/GacA family response regulator transcription factor [KO:K07689]
JLK41_15410  response regulator transcription factor [KO:K07689]
JLK41_08685  csrA; carbon storage regulator CsrA [KO:K03563]
JLK41_15595  response regulator [KO:K20973] [EC:2.7.13.3]
JLK41_11525  response regulator [KO:K20974] [EC:2.7.13.3]
JLK41_15460  PAS-domain containing protein [KO:K20975] [EC:2.7.13.3]
JLK41_16130  Hpt domain-containing protein [KO:K20976]
JLK41_16135  fused response regulator/phosphatase [KO:K20977]
JLK41_16140  STAS domain-containing protein [KO:K20978]
JLK41_16365  flgM; flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
JLK41_24230  flgM; flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
JLK41_16065  RNA polymerase sigma factor FliA [KO:K02405]
JLK41_00785  FliA/WhiG family RNA polymerase sigma factor [KO:K02405]
JLK41_23015  tagF; type VI secretion system-associated protein TagF [KO:K11890]
JLK41_23020  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
JLK41_23030  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
JLK41_23045  tagH; type VI secretion system-associated FHA domain protein TagH [KO:K11913]
JLK41_23060  tssA; type VI secretion system protein TssA [KO:K11902]
JLK41_23065  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
JLK41_23070  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
JLK41_23075  type VI secretion system tube protein Hcp [KO:K11903]
JLK41_23085  type VI secretion system tube protein Hcp [KO:K11903]
JLK41_23105  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
JLK41_23115  tssH; type VI secretion system ATPase TssH [KO:K11907]
JLK41_21255  methyl-accepting chemotaxis protein [KO:K13487]
JLK41_21275  hybrid sensor histidine kinase/response regulator [KO:K13490]
JLK41_21260  purine-binding chemotaxis protein CheW [KO:K13488]
JLK41_21270  chemotaxis protein CheW [KO:K13489]
JLK41_21280  chemotaxis response regulator protein-glutamate methylesterase [KO:K13491] [EC:3.1.1.61]
JLK41_21285  PleD family two-component system response regulator [KO:K11444] [EC:2.7.7.65]
JLK41_14580  GGDEF domain-containing protein [KO:K21019] [EC:2.7.7.65]
JLK41_18475  EAL domain-containing protein [KO:K21024] [EC:3.1.4.52]
JLK41_05165  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
JLK41_01020  bifunctional glycoside hydrolase 114/polysaccharide deacetylase family protein [KO:K21006]
JLK41_01025  tetratricopeptide repeat protein [KO:K21007]
JLK41_01030  penicillin-binding protein activator LpoB [KO:K21008]
JLK41_01035  sugar transporter [KO:K21009]
JLK41_01040  HEAT repeat domain-containing protein [KO:K21010]
JLK41_01045  pelF; GT4 family glycosyltransferase PelF [KO:K21011]
JLK41_01050  pelG; exopolysaccharide Pel transporter PelG [KO:K21012]
JLK41_05210  alginate biosynthesis protein Alg44 [KO:K19291] [EC:2.4.1.33]
JLK41_03160  EAL domain-containing protein [KO:K21025]
JLK41_03165  molecular chaperone [KO:K23127]
JLK41_16955  PilZ domain-containing protein [KO:K23127]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
pkh02024  Quorum sensing
pkh02040  Flagellar assembly
pkh03070  Bacterial secretion system
KO pathway
ko02025   
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