KEGG   PATHWAY: pkp00020
Entry
pkp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus konkukensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pkp00020  Citrate cycle (TCA cycle)
pkp00020

Module
pkp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pkp00020]
pkp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pkp00020]
pkp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pkp00020]
pkp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pkp00020]
pkp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pkp00020]
Other DBs
GO: 0006099
Organism
Paenibacillus konkukensis [GN:pkp]
Gene
SK3146_02293  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
SK3146_05970  leuA_4; 2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
SK3146_03277  citB; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SK3146_02292  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SK3146_01187  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SK3146_01672  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SK3146_06715  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SK3146_06716  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SK3146_06619  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SK3146_06618  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SK3146_05540  frdA_2; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SK3146_05541  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SK3146_05539  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
SK3146_02275  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K01676] [EC:4.2.1.2]
SK3146_06753  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SK3146_02291  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SK3146_03901  mqo1; putative malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
SK3146_01744  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SK3146_01675  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SK3146_01674  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SK3146_01673  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SK3146_00662  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
SK3146_00663  porC; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pkp00010  Glycolysis / Gluconeogenesis
pkp00053  Ascorbate and aldarate metabolism
pkp00061  Fatty acid biosynthesis
pkp00071  Fatty acid degradation
pkp00190  Oxidative phosphorylation
pkp00220  Arginine biosynthesis
pkp00250  Alanine, aspartate and glutamate metabolism
pkp00280  Valine, leucine and isoleucine degradation
pkp00350  Tyrosine metabolism
pkp00470  D-Amino acid metabolism
pkp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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