KEGG   PATHWAY: plab00630
Entry
plab00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Plantactinospora sp. BC1
Class
Metabolism; Carbohydrate metabolism
Pathway map
plab00630  Glyoxylate and dicarboxylate metabolism
plab00630

Module
plab_M00012  Glyoxylate cycle [PATH:plab00630]
plab_M00621  Glycine cleavage system [PATH:plab00630]
Other DBs
GO: 0046487 0043648
Organism
Plantactinospora sp. BC1 [GN:plab]
Gene
C6361_22235  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
C6361_19075  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C6361_13230  malate synthase A [KO:K01638] [EC:2.3.3.9]
C6361_22240  malate synthase A [KO:K01638] [EC:2.3.3.9]
C6361_33230  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C6361_02505  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C6361_21480  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
C6361_08455  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
C6361_19585  citrate synthase [KO:K01647] [EC:2.3.3.1]
C6361_24790  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
C6361_01735  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C6361_20985  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C6361_32375  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C6361_20155  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
C6361_00050  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
C6361_20980  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
C6361_12690  acetyl-/propionyl-CoA carboxylase subunit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
C6361_35235  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
C6361_12620  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
C6361_01930  methylaspartate mutase [KO:K19268] [EC:5.4.99.1]
C6361_01935  methylaspartate mutase [KO:K01846] [EC:5.4.99.1]
C6361_13235  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
C6361_11090  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
C6361_13240  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
C6361_18510  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
C6361_13245  glycolate oxidase [KO:K11473] [EC:1.1.99.14]
C6361_21090  catalase [KO:K03781] [EC:1.11.1.6]
C6361_19495  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
C6361_33435  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C6361_33535  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C6361_16055  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
C6361_03655  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C6361_20615  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C6361_25580  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C6361_03755  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
C6361_35110  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
C6361_35125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C6361_03845  gcvH; glycine cleavage system protein H [KO:K02437]
C6361_08975  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
C6361_09070  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
C6361_09065  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
C6361_35030  hypothetical protein [KO:K00865] [EC:2.7.1.165]
C6361_09060  glycerate kinase [KO:K00865] [EC:2.7.1.165]
C6361_28875  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
C6361_05740  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C6361_13145  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C6361_28610  aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C6361_14340  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C6361_03085  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
C6361_09080  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
C6361_04010  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
C6361_04015  dehydrogenase [KO:K00123] [EC:1.17.1.9]
C6361_09085  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
C6361_14950  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
C6361_04005  4Fe-4S ferredoxin [KO:K00124]
C6361_09090  formate dehydrogenase [KO:K00124]
C6361_14955  ferredoxin [KO:K00124]
C6361_09095  formate dehydrogenase subunit gamma [KO:K00127]
C6361_05640  formamidase [KO:K01455] [EC:3.5.1.49]
C6361_08990  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
C6361_09020  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
plab00010  Glycolysis / Gluconeogenesis
plab00020  Citrate cycle (TCA cycle)
plab00030  Pentose phosphate pathway
plab00053  Ascorbate and aldarate metabolism
plab00071  Fatty acid degradation
plab00230  Purine metabolism
plab00250  Alanine, aspartate and glutamate metabolism
plab00260  Glycine, serine and threonine metabolism
plab00620  Pyruvate metabolism
plab00710  Carbon fixation by Calvin cycle
plab00750  Vitamin B6 metabolism
plab00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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