KEGG   PATHWAY: plat00630
Entry
plat00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Plantactinospora sp. BB1
Class
Metabolism; Carbohydrate metabolism
Pathway map
plat00630  Glyoxylate and dicarboxylate metabolism
plat00630

Module
plat_M00012  Glyoxylate cycle [PATH:plat00630]
plat_M00621  Glycine cleavage system [PATH:plat00630]
Other DBs
GO: 0046487 0043648
Organism
Plantactinospora sp. BB1 [GN:plat]
Gene
C6W10_17195  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
C6W10_28765  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C6W10_12175  malate synthase A [KO:K01638] [EC:2.3.3.9]
C6W10_17200  malate synthase A [KO:K01638] [EC:2.3.3.9]
C6W10_23915  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C6W10_16405  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
C6W10_29190  citrate synthase [KO:K01647] [EC:2.3.3.1]
C6W10_19150  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C6W10_05025  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
C6W10_33405  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C6W10_23605  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
C6W10_31025  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C6W10_22775  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C6W10_21540  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
C6W10_22780  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
C6W10_09800  acetyl-/propionyl-CoA carboxylase subunit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
C6W10_09880  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
C6W10_09730  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
C6W10_19740  methylaspartate mutase [KO:K19268] [EC:5.4.99.1]
C6W10_19735  methylaspartate mutase [KO:K01846] [EC:5.4.99.1]
C6W10_12170  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
C6W10_08185  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
C6W10_12165  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
C6W10_28195  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
C6W10_12160  glycolate oxidase [KO:K11473] [EC:1.1.99.14]
C6W10_22670  catalase [KO:K03781] [EC:1.11.1.6]
C6W10_29105  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
C6W10_24885  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
C6W10_27075  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C6W10_27180  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C6W10_14330  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
C6W10_23145  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C6W10_13270  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C6W10_00205  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C6W10_00300  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
C6W10_26970  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
C6W10_26985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C6W10_00380  gcvH; glycine cleavage system protein H [KO:K02437]
C6W10_05520  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
C6W10_05615  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
C6W10_05610  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
C6W10_05605  glycerate kinase [KO:K00865] [EC:2.7.1.165]
C6W10_26885  hypothetical protein [KO:K00865] [EC:2.7.1.165]
C6W10_18120  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
C6W10_02285  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C6W10_12260  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C6W10_17765  aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C6W10_10810  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C6W10_18545  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
C6W10_05625  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
C6W10_00545  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
C6W10_00550  dehydrogenase [KO:K00123] [EC:1.17.1.9]
C6W10_05630  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
C6W10_15400  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
C6W10_05635  formate dehydrogenase [KO:K00124]
C6W10_00540  4Fe-4S ferredoxin [KO:K00124]
C6W10_15395  ferredoxin [KO:K00124]
C6W10_05640  formate dehydrogenase subunit gamma [KO:K00127]
C6W10_02185  formamidase [KO:K01455] [EC:3.5.1.49]
C6W10_05535  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
C6W10_05565  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
plat00010  Glycolysis / Gluconeogenesis
plat00020  Citrate cycle (TCA cycle)
plat00030  Pentose phosphate pathway
plat00053  Ascorbate and aldarate metabolism
plat00071  Fatty acid degradation
plat00230  Purine metabolism
plat00250  Alanine, aspartate and glutamate metabolism
plat00260  Glycine, serine and threonine metabolism
plat00620  Pyruvate metabolism
plat00710  Carbon fixation by Calvin cycle
plat00750  Vitamin B6 metabolism
plat00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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