KEGG   PATHWAY: pno00020
Entry
pno00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Parastagonospora nodorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pno00020  Citrate cycle (TCA cycle)
pno00020

Module
pno_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pno00020]
pno_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pno00020]
pno_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pno00020]
pno_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pno00020]
pno_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pno00020]
Other DBs
GO: 0006099
Organism
Parastagonospora nodorum [GN:pno]
Gene
SNOG_07690  hypothetical protein [KO:K01647] [EC:2.3.3.1]
SNOG_01742  hypothetical protein [KO:K01647] [EC:2.3.3.1]
SNOG_06832  hypothetical protein [KO:K01648] [EC:2.3.3.8]
SNOG_06833  hypothetical protein [KO:K01648] [EC:2.3.3.8]
SNOG_12234  hypothetical protein [KO:K01681] [EC:4.2.1.3]
SNOG_01446  hypothetical protein [KO:K00031] [EC:1.1.1.42]
SNOG_06082  hypothetical protein [KO:K00030] [EC:1.1.1.41]
SNOG_03647  hypothetical protein [KO:K00030] [EC:1.1.1.41]
SNOG_14343  hypothetical protein [KO:K00164] [EC:1.2.4.2]
SNOG_14609  hypothetical protein [KO:K00658] [EC:2.3.1.61]
SNOG_02707  hypothetical protein [KO:K00382] [EC:1.8.1.4]
SNOG_08494  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
SNOG_15384  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
SNOG_07991  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
SNOG_16547  SNOG_16546; hypothetical protein [KO:K00234] [EC:1.3.5.1]
SNOG_07395  SNOG_07394; hypothetical protein [KO:K00234] [EC:1.3.5.1]
SNOG_03351  hypothetical protein [KO:K00235] [EC:1.3.5.1]
SNOG_11157  hypothetical protein [KO:K00236]
SNOG_11620  hypothetical protein [KO:K00237]
SNOG_07423  hypothetical protein [KO:K01679] [EC:4.2.1.2]
SNOG_09027  hypothetical protein [KO:K00026] [EC:1.1.1.37]
SNOG_05974  hypothetical protein [KO:K00026] [EC:1.1.1.37]
SNOG_03504  hypothetical protein [KO:K01958] [EC:6.4.1.1]
SNOG_06290  hypothetical protein [KO:K01610] [EC:4.1.1.49]
SNOG_13014  hypothetical protein [KO:K00161] [EC:1.2.4.1]
SNOG_08442  hypothetical protein [KO:K00162] [EC:1.2.4.1]
SNOG_06060  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pno00010  Glycolysis / Gluconeogenesis
pno00053  Ascorbate and aldarate metabolism
pno00061  Fatty acid biosynthesis
pno00062  Fatty acid elongation
pno00071  Fatty acid degradation
pno00190  Oxidative phosphorylation
pno00220  Arginine biosynthesis
pno00250  Alanine, aspartate and glutamate metabolism
pno00280  Valine, leucine and isoleucine degradation
pno00350  Tyrosine metabolism
pno00470  D-Amino acid metabolism
pno00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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