KEGG   PATHWAY: pou00020
Entry
pou00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Penicillium oxalicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pou00020  Citrate cycle (TCA cycle)
pou00020

Module
pou_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pou00020]
pou_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pou00020]
pou_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pou00020]
pou_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pou00020]
pou_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pou00020]
Other DBs
GO: 0006099
Organism
Penicillium oxalicum [GN:pou]
Gene
POX_f07626  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
POX_a00855  Citrate synthase [KO:K01647] [EC:2.3.3.1]
POX_d04887  putative ATP-citrate synthase subunit 2 [KO:K01648] [EC:2.3.3.8]
POX_d04889  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
POX_a01787  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
POX_g08743  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
POX_e06516  Isocitrate dehydrogenase [NAD] subunit 1 [KO:K00030] [EC:1.1.1.41]
POX_c03825  Isocitrate dehydrogenase [NAD] subunit 2 [KO:K00030] [EC:1.1.1.41]
POX_a01388  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
POX_g09148  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
POX_g08941  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
POX_a00709  Succinate--CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
POX_c04101  Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
POX_b02189  Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
POX_c04677  Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
POX_g08987  putative succinate dehydrogenase [ubiquinone] flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
POX_d05533  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
POX_a00169  hypothetical protein [KO:K00236]
POX_a00796  hypothetical protein [KO:K00236]
POX_c03921  Succinate dehydrogenase cytochrome b small subunit [KO:K00237]
POX_f07532  Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
POX_e06184  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
POX_c04450  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
POX_b02297  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
POX_a01092  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
POX_e06462  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
POX_g09193  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
POX_e06186  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pou00010  Glycolysis / Gluconeogenesis
pou00053  Ascorbate and aldarate metabolism
pou00061  Fatty acid biosynthesis
pou00062  Fatty acid elongation
pou00071  Fatty acid degradation
pou00190  Oxidative phosphorylation
pou00220  Arginine biosynthesis
pou00250  Alanine, aspartate and glutamate metabolism
pou00280  Valine, leucine and isoleucine degradation
pou00350  Tyrosine metabolism
pou00470  D-Amino acid metabolism
pou00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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