KEGG   PATHWAY: ppaf00630
Entry
ppaf00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pelagovum pacificum
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppaf00630  Glyoxylate and dicarboxylate metabolism
ppaf00630

Module
ppaf_M00012  Glyoxylate cycle [PATH:ppaf00630]
ppaf_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ppaf00630]
Other DBs
GO: 0046487 0043648
Organism
Pelagovum pacificum [GN:ppaf]
Gene
I8N54_11460  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
I8N54_13965  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
I8N54_05260  malate synthase G [KO:K01638] [EC:2.3.3.9]
I8N54_16915  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I8N54_08565  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
I8N54_07780  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
I8N54_01790  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I8N54_06895  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I8N54_17480  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I8N54_19565  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
I8N54_17470  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
I8N54_01335  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
I8N54_16895  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
I8N54_10810  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
I8N54_10835  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
I8N54_10795  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
I8N54_02470  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
I8N54_02475  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
I8N54_02480  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
I8N54_09765  catalase [KO:K03781] [EC:1.11.1.6]
I8N54_16405  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
I8N54_03505  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
I8N54_06250  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
I8N54_06925  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
I8N54_12025  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
I8N54_05720  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
I8N54_05755  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
I8N54_06860  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
I8N54_01615  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
I8N54_11185  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I8N54_16965  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I8N54_13140  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
I8N54_15435  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
I8N54_13135  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
I8N54_07330  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
I8N54_07580  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
I8N54_00790  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
I8N54_03770  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
I8N54_03095  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
I8N54_06490  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppaf00010  Glycolysis / Gluconeogenesis
ppaf00020  Citrate cycle (TCA cycle)
ppaf00030  Pentose phosphate pathway
ppaf00053  Ascorbate and aldarate metabolism
ppaf00071  Fatty acid degradation
ppaf00230  Purine metabolism
ppaf00250  Alanine, aspartate and glutamate metabolism
ppaf00260  Glycine, serine and threonine metabolism
ppaf00620  Pyruvate metabolism
ppaf00710  Carbon fixation by Calvin cycle
ppaf00750  Vitamin B6 metabolism
ppaf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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