KEGG   PATHWAY: pphr03018
Entry
pphr03018                   Pathway                                
Name
RNA degradation - Pannonibacter phragmitetus
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pphr03018  RNA degradation
pphr03018

Other DBs
GO: 0006401
Organism
Pannonibacter phragmitetus [GN:pphr]
Gene
APZ00_05770  RNA pyrophosphohydrolase [KO:K08311] [EC:3.6.1.-]
APZ00_17365  ribonuclease E [KO:K08300] [EC:3.1.26.12]
APZ00_18565  eno; enolase [KO:K01689] [EC:4.2.1.11]
APZ00_05015  polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
APZ00_00840  RNA helicase [KO:K11927] [EC:5.6.2.7]
APZ00_20075  ribonuclease R [KO:K12573] [EC:3.1.13.1]
APZ00_00310  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
APZ00_07475  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
APZ00_06540  transcription termination factor Rho [KO:K03628]
APZ00_17575  MBL fold metallo-hydrolase [KO:K12574] [EC:3.1.-.-]
APZ00_05155  dnaK; Fe-S protein assembly chaperone HscA [KO:K04043]
APZ00_01440  groEL; molecular chaperone GroEL [KO:K04077] [EC:5.6.1.7]
APZ00_10445  groEL; molecular chaperone GroEL [KO:K04077] [EC:5.6.1.7]
APZ00_18175  RNA-binding protein hfq [KO:K03666]
APZ00_18455  polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
APZ00_08645  polyphosphate kinase [KO:K22468] [EC:2.7.4.34]
APZ00_14920  polyphosphate kinase [KO:K22468] [EC:2.7.4.34]
APZ00_13335  poly(A) polymerase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
LinkDB

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