KEGG   PATHWAY: pput02025
Entry
pput02025                   Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas putida H8234
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pput02025  Biofilm formation - Pseudomonas aeruginosa
pput02025

Organism
Pseudomonas putida H8234 [GN:pput]
Gene
L483_30100  chemotaxis protein [KO:K02660]
L483_30105  type IV pili signal transduction protein PilI [KO:K02659]
L483_30095  chemotaxis protein CheY [KO:K06596]
L483_30090  chemotaxis protein [KO:K06598]
L483_30110  chemotaxis protein CheY [KO:K02658]
L483_30115  chemotaxis protein CheY [KO:K02657]
L483_29735  ser/threonine protein phosphatase [KO:K03651] [EC:3.1.4.53]
L483_02155  transcriptional regulator [KO:K10914]
L483_24210  ATPase AAA [KO:K10941]
L483_02125  anthranilate synthase subunit I [KO:K01657] [EC:4.1.3.27]
L483_02135  anthranilate synthase subunit II [KO:K01658] [EC:4.1.3.27]
L483_05825  chemotaxis protein CheY [KO:K07678] [EC:2.7.13.3]
L483_29050  sensor histidine kinase [KO:K20971]
L483_29255  sensor histidine kinase [KO:K20972]
L483_22840  chemotaxis protein CheY [KO:K07689]
L483_10820  transcriptional regulator [KO:K07689]
L483_21480  carbon storage regulator CsrA [KO:K03563]
L483_28535  carbon storage regulator CsrA [KO:K03563]
L483_06260  carbon storage regulator [KO:K03563]
L483_24435  carbon storage regulator [KO:K03563]
L483_06890  histidine kinase [KO:K20973] [EC:2.7.13.3]
L483_23200  sensor histidine kinase [KO:K20974] [EC:2.7.13.3]
L483_10780  sensor histidine kinase [KO:K20975] [EC:2.7.13.3]
L483_24090  sensor histidine kinase [KO:K20976]
L483_24095  chemotaxis protein CheY [KO:K20977]
L483_24100  anti-anti-sigma regulatory factor [KO:K20978]
L483_24320  anti-sigma-28 factor FlgM [KO:K02398]
L483_24025  RNA polymerase sigma 70 [KO:K02405]
L483_05305  chemotaxis protein [KO:K13487]
L483_05325  chemotaxis protein CheA [KO:K13490]
L483_05310  chemotaxis protein CheW [KO:K13488]
L483_05320  chemotaxis protein CheW [KO:K13489]
L483_05330  chemotaxis protein CheY [KO:K13491] [EC:3.1.1.61]
L483_05335  diguanylate cyclase [KO:K11444] [EC:2.7.7.65]
L483_27875  DeoR family transcriptional regulator [KO:K21021] [EC:2.7.7.65]
L483_18775  membrane protein [KO:K21023] [EC:2.7.7.65]
L483_26765  diguanylate cyclase [KO:K21024] [EC:3.1.4.52]
L483_27290  mannose-1-phosphate guanylyltransferase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
L483_06405  mannose-1-phosphate guanylyltransferase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
L483_07865  glycosyl transferase [KO:K21001]
L483_27245  hemolysin D [KO:K19291] [EC:2.4.1.33]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
pput02024  Quorum sensing
pput02040  Flagellar assembly
pput03070  Bacterial secretion system
KO pathway
ko02025   
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