KEGG   PATHWAY: prhz00630
Entry
prhz00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas rhizophila
Class
Metabolism; Carbohydrate metabolism
Pathway map
prhz00630  Glyoxylate and dicarboxylate metabolism
prhz00630

Module
prhz_M00621  Glycine cleavage system [PATH:prhz00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas rhizophila [GN:prhz]
Gene
CRX69_15295  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
CRX69_22875  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CRX69_05850  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CRX69_17710  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
CRX69_24110  malate synthase G [KO:K01638] [EC:2.3.3.9]
CRX69_11300  malate synthase G [KO:K01638] [EC:2.3.3.9]
CRX69_06880  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CRX69_21145  DNA-binding protein [KO:K01647] [EC:2.3.3.1]
CRX69_11385  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
CRX69_22240  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CRX69_16035  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CRX69_02735  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CRX69_11180  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CRX69_17700  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CRX69_19010  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CRX69_21210  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CRX69_04665  3-hydroxybutyryl-CoA dehydratase [KO:K17865] [EC:4.2.1.55]
CRX69_23415  acetyl/propionyl-CoA carboxylase subunit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
CRX69_11280  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
CRX69_11285  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
CRX69_11290  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
CRX69_23250  catalase [KO:K03781] [EC:1.11.1.6]
CRX69_26455  catalase HPII [KO:K03781] [EC:1.11.1.6]
CRX69_07085  catalase [KO:K03781] [EC:1.11.1.6]
CRX69_15025  catalase [KO:K03781] [EC:1.11.1.6]
CRX69_20625  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CRX69_08760  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CRX69_22360  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
CRX69_23795  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CRX69_26865  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CRX69_10930  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CRX69_24825  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CRX69_00820  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CRX69_00830  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CRX69_06010  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CRX69_12000  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CRX69_15120  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CRX69_23195  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CRX69_24225  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CRX69_10085  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
CRX69_21745  aminomethyl-transferring glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]
CRX69_21740  aminomethyl-transferring glycine dehydrogenase [KO:K00283] [EC:1.4.4.2]
CRX69_00720  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
CRX69_10075  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
CRX69_26100  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CRX69_06915  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CRX69_20200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CRX69_00725  gcvH; glycine cleavage system protein H [KO:K02437]
CRX69_10090  gcvH; glycine cleavage system protein H [KO:K02437]
CRX69_06830  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
CRX69_06825  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CRX69_21485  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CRX69_06820  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
CRX69_20295  glycerate kinase [KO:K00865] [EC:2.7.1.165]
CRX69_06815  glycerate kinase [KO:K11529] [EC:2.7.1.165]
CRX69_15680  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CRX69_04630  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CRX69_15870  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
CRX69_15865  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CRX69_15860  formate dehydrogenase [KO:K00124]
CRX69_15855  formate dehydrogenase subunit gamma [KO:K00127]
CRX69_24200  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CRX69_09800  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CRX69_21695  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
CRX69_24705  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
prhz00010  Glycolysis / Gluconeogenesis
prhz00020  Citrate cycle (TCA cycle)
prhz00030  Pentose phosphate pathway
prhz00053  Ascorbate and aldarate metabolism
prhz00071  Fatty acid degradation
prhz00230  Purine metabolism
prhz00250  Alanine, aspartate and glutamate metabolism
prhz00260  Glycine, serine and threonine metabolism
prhz00620  Pyruvate metabolism
prhz00710  Carbon fixation by Calvin cycle
prhz00750  Vitamin B6 metabolism
prhz00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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