KEGG   PATHWAY: psq04120
Entry
psq04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Punctularia strigosozonata
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
psq04120  Ubiquitin mediated proteolysis
psq04120

Other DBs
GO: 0016567
Organism
Punctularia strigosozonata [GN:psq]
Gene
PUNSTDRAFT_101350  ubiquitin-domain-containing protein [KO:K02977]
PUNSTDRAFT_51364  ubiquitin activating enzyme [KO:K03178] [EC:6.2.1.45]
PUNSTDRAFT_97317  hypothetical protein [KO:K10684] [EC:6.2.1.45]
PUNSTDRAFT_146335  hypothetical protein [KO:K10685] [EC:6.2.1.45]
PUNSTDRAFT_53600  hypothetical protein [KO:K10686] [EC:6.2.1.64]
PUNSTDRAFT_96290  ubiquitin-conjugating enzyme [KO:K10573] [EC:2.3.2.23]
PUNSTDRAFT_88295  hypothetical protein [KO:K06688] [EC:2.3.2.23]
PUNSTDRAFT_113776  ubiquitin-conjugating enzyme E2 [KO:K06689] [EC:2.3.2.23]
PUNSTDRAFT_106844  ubiquitin-conjugating enzyme [KO:K10575] [EC:2.3.2.23]
PUNSTDRAFT_91437  ubiquitin-conjugating enzyme [KO:K04555] [EC:2.3.2.23]
PUNSTDRAFT_119552  hypothetical protein [KO:K10576] [EC:2.3.2.23]
PUNSTDRAFT_53556  ubiquitin-conjugating enzyme 9 [KO:K10577]
PUNSTDRAFT_103885  UBC-like protein [KO:K10578] [EC:2.3.2.23]
PUNSTDRAFT_51739  UBC-like protein [KO:K04554] [EC:2.3.2.23]
PUNSTDRAFT_81407  hypothetical protein [KO:K04649] [EC:2.3.2.23]
PUNSTDRAFT_55435  ubiquitin-conjugating enzyme [KO:K10580] [EC:2.3.2.23]
PUNSTDRAFT_140436  hypothetical protein [KO:K10581] [EC:2.3.2.24]
PUNSTDRAFT_73814  ubiquitin-conjugating enzyme E2s [KO:K10583] [EC:2.3.2.23]
PUNSTDRAFT_141592  HECT-domain-containing protein [KO:K10589] [EC:2.3.2.26]
PUNSTDRAFT_120033  hypothetical protein [KO:K10590] [EC:2.3.2.26]
PUNSTDRAFT_135581  HECT-domain-containing protein [KO:K10591] [EC:2.3.2.26]
PUNSTDRAFT_83596  hypothetical protein [KO:K10592] [EC:2.3.2.26]
PUNSTDRAFT_131213  hypothetical protein [KO:K10597] [EC:2.3.2.27]
PUNSTDRAFT_117697  cyclophilin-like protein [KO:K10598] [EC:5.2.1.8]
PUNSTDRAFT_78919  WD40 repeat-like protein [KO:K10599] [EC:2.3.2.27]
PUNSTDRAFT_95125  hypothetical protein [KO:K04706] [EC:2.3.2.-]
PUNSTDRAFT_119134  hypothetical protein [KO:K10601] [EC:2.3.2.27]
PUNSTDRAFT_80891  Rbx1 protein [KO:K03868] [EC:2.3.2.32]
PUNSTDRAFT_18709  E3 ubiquitin ligase SCF complex Skp subunit [KO:K03094]
PUNSTDRAFT_104688  hypothetical protein [KO:K03094]
PUNSTDRAFT_124012  WD40 repeat-like protein [KO:K03362]
PUNSTDRAFT_91144  WD40 repeat-like protein [KO:K03361]
PUNSTDRAFT_71482  WD40 repeat-like protein [KO:K03361]
PUNSTDRAFT_69403  WD40 repeat-like protein [KO:K10259]
PUNSTDRAFT_64863  SCF E3 ubiquitin ligase complex F-box protein grrA [KO:K03360]
PUNSTDRAFT_132968  RNI-like protein [KO:K03360]
PUNSTDRAFT_138383  POZ domain-containing protein [KO:K03872]
PUNSTDRAFT_86155  Cullin-domain-containing protein [KO:K03869]
PUNSTDRAFT_57860  Cullin-4B [KO:K10609]
PUNSTDRAFT_97523  hypothetical protein [KO:K10610]
PUNSTDRAFT_94105  anaphase-promoting complex subunit Apc11 [KO:K03358]
PUNSTDRAFT_94091  RING/U-box [KO:K03358]
PUNSTDRAFT_118507  ubiquitin-protein ligase [KO:K03349]
PUNSTDRAFT_129849  WD40 repeat-like protein [KO:K03363]
PUNSTDRAFT_105386  WD40 repeat-like protein [KO:K03364]
PUNSTDRAFT_106906  hypothetical protein [KO:K03348]
PUNSTDRAFT_93841  TPR-like protein [KO:K03350]
PUNSTDRAFT_59241  hypothetical protein [KO:K03351]
PUNSTDRAFT_105115  hypothetical protein [KO:K03352]
PUNSTDRAFT_101987  TPR-like protein [KO:K03353]
PUNSTDRAFT_98394  TPR-like protein [KO:K03355]
PUNSTDRAFT_55257  anaphase-promoting complex subunit 10 [KO:K03357]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
psq03050  Proteasome
KO pathway
ko04120   
LinkDB

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